Plant FIBer expression Database

Lus10017685 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033642
[exp]
211 / 5e-67 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2)
Lus10039883
[exp]
44 / 3e-05 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2)
Lus10018649
[exp]
42 / 0.0001 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10017685 pacid=23155558 polypeptide=Lus10017685 locus=Lus10017685.g ID=Lus10017685.BGIv1.0 annot-version=v1.0
ATGTTAGCTGTGTCCTCGTCGGTGGACCATGAGATCTTCCAAGGGAAAGCCATCAACAGCGCCGGCGAAGATGAGGCTGGACCGTCGTCGTTCATGCCGG
ATTTCCACCACGAGCTGTTGCTGGAAAGCATCGATTTCGATGAACTGTTCGTGGGGTTCAACGACGTCGAGGTCGATGGTAGTACTGCTGGAGATGTGTT
GCTCCCGGATTTGGAGATGGTCGAGTTCTCCGGCGGTACTGCTGACGTCAGTGATGAGTCCGAGGTGGTCCAGAACTGTATGATGATGACTACGGCGAAA
GAAGGGGAGACTGGGTCAACGGTCGAGTCTCCTTCTTCGTCGTCGGTGGTGTTGAACCCAGAAAAGGGGAAGAAGAAGTCTTCGTCGGCTCCGGAGACTT
CGTCGGGTTCCACTCATCGGAATTGTGGTAGCAAGAACACTCATGGAAAGAGAAAAGTTAAGTCAAAAGAGAGCATAGACGCAGCCATAGGCGCTACGGG
GCGTCCTTATCCAGTGCCCGTGGCCGCCCGCCCCTTCGGGGCTTTAAACAACCGGCAGTCGACAGCGTAG
AA sequence
>Lus10017685 pacid=23155558 polypeptide=Lus10017685 locus=Lus10017685.g ID=Lus10017685.BGIv1.0 annot-version=v1.0
MLAVSSSVDHEIFQGKAINSAGEDEAGPSSFMPDFHHELLLESIDFDELFVGFNDVEVDGSTAGDVLLPDLEMVEFSGGTADVSDESEVVQNCMMMTTAK
EGETGSTVESPSSSSVVLNPEKGKKKSSSAPETSSGSTHRNCGSKNTHGKRKVKSKESIDAAIGATGRPYPVPVAARPFGALNNRQSTA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017685
[exp]
0 1
AT1G09310 Protein of unknown function, D... Lus10010904
[exp]
12.1 0.8363
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Lus10009703
[exp]
12.7 0.8033
AT1G09310 Protein of unknown function, D... Lus10031428
[exp]
19.6 0.8254
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10022541
[exp]
28.3 0.7930
AT5G41410 HD BEL1 BELL 1, POX (plant homeobox) f... Lus10017513
[exp]
30.5 0.7867
AT4G35780 STY17 serine/threonine/tyrosine kina... Lus10026461
[exp]
36.9 0.7905
AT2G36970 UDP-Glycosyltransferase superf... Lus10016128
[exp]
37.3 0.7861
AT2G18245 alpha/beta-Hydrolases superfam... Lus10041762
[exp]
39.9 0.7904
AT3G47590 alpha/beta-Hydrolases superfam... Lus10012836
[exp]
44.0 0.7539
AT1G01630 Sec14p-like phosphatidylinosit... Lus10040252
[exp]
49.7 0.7678

Lus10017685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.