Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28490 269 / 6e-91 OSM1, ATSYP61, SYP61 syntaxin of plants 61 (.1.2) AT1G79590 47 / 4e-06 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16240 45 / 2e-05 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT2G20562 41 / 4e-05 unknown protein AT2G31090 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018642 [exp] 353 / 8e-124 AT1G28490 334 / 7e-117 syntaxin of plants 61 (.1.2) Lus10039880 [exp] 317 / 7e-109 AT1G28490 271 / 4e-91 syntaxin of plants 61 (.1.2) Lus10017667 [exp] 57 / 1e-10 AT2G31090 110 / 1e-33 unknown protein Lus10033620 [exp] 56 / 9e-09 AT1G06240 303 / 2e-101 Protein of unknown function DUF455 (.1) Lus10016577 [exp] 45 / 1e-05 AT1G79590 319 / 1e-111 syntaxin of plants 52 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050800 [exp] 318 / 2e-110 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2) Potri.011G059700 [exp] 309 / 1e-106 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2) Potri.001G395200 [exp] 65 / 9e-14 AT2G20562 76 / 5e-20 unknown protein Potri.011G114600 [exp] 64 / 4e-13 AT2G20562 102 / 1e-30 unknown protein Potri.007G136800 [exp] 59 / 1e-11 AT2G20562 46 / 2e-08 unknown protein Potri.017G015900 [exp] 57 / 6e-11 ND / Potri.019G090500 [exp] 56 / 2e-10 AT2G31090 42 / 8e-07 unknown protein Potri.011G063900 [exp] 49 / 1e-07 AT2G31090 59 / 3e-13 unknown protein Potri.006G032800 [exp] 49 / 7e-07 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.006G032900 [exp] 47 / 6e-06 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [flax] [poplar] Syntaxin-6_N Syntaxin 6, N-terminal PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10017686 pacid=23155487 polypeptide=Lus10017686 locus=Lus10017686.g ID=Lus10017686.BGIv1.0 annot-version=v1.0 ATGACGGATTGCAGGCCGCTGGGTTTCTTGATCGGGCTCCCCTTCGCTTTGATAGCATTGGTTCTGTCCCTCGTCGGCGCCGTCATTTGGATTGATAAGT TGCTGTCAACATTTCAACGATGGGAAAGGCTGAATTCGAATACTGGAGAGCAAGTAAACCCTACAAAGGAGCTTCTCGCTAACAGCGAGAGCATCGAGTG GCAGGTACTGAAAGCTGTATGCAGCTGGAAGGTGGATGAATTGGACAAAGCAATATCTGTAGCAGCTCGTGATCCTTCTTTGTATGGCATCGATCATGTG GAACTCGAGAACCGGAGAAGATGGACGAGCAGTGCACGCAGTCAGGTCGGGAATGTGAAGAGATCAGTGGTTGCTGGAAGAGAAGGAATCGGTGGGGGAG CTACGAGCATGAATGGGATGCGCAGAGAGTTAATGAGGCTACAAAATTCTCAACAGACAGTTGGACCCAACCACTACAATGATGATAATGACGATTTTAT ACAATCCGAATCAGATAGACAACTGCTTCTTATCAAGCAACAAGATGAAGAGCTGGACGAACTTAGTGCAAGCGTGGAGAGAATCGGCAGTGTTGGGCTT ACCATCCACGAAGAACTCCTCTCGCAGGAGAGGATCATAGACGATTTAGGGAACGAAATGGACAGCACAAGTAACCGACTCGACTTCGTCCAGAAGAAAG TGGGGATGGTGATGAAGAAGGCGGGCGCGAAGGGTCAACTGATGATGATACTGTTCTTGGTAGCTCTTTTCGTAATCCTGTTCGTCCTCGTGTTCCTTAC TTGA
AA sequence Show only first row Show all	>Lus10017686 pacid=23155487 polypeptide=Lus10017686 locus=Lus10017686.g ID=Lus10017686.BGIv1.0 annot-version=v1.0 MTDCRPLGFLIGLPFALIALVLSLVGAVIWIDKLLSTFQRWERLNSNTGEQVNPTKELLANSESIEWQVLKAVCSWKVDELDKAISVAARDPSLYGIDHV ELENRRRWTSSARSQVGNVKRSVVAGREGIGGGATSMNGMRRELMRLQNSQQTVGPNHYNDDNDDFIQSESDRQLLLIKQQDEELDELSASVERIGSVGL TIHEELLSQERIIDDLGNEMDSTSNRLDFVQKKVGMVMKKAGAKGQLMMILFLVALFVILFVLVFLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	0	1
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	1.7	0.9525
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	1.7	0.9408
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	2.2	0.9369
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	2.8	0.9384
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	2.8	0.9486
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	2.8	0.9356
AT4G32960			unknown protein		Lus10007456 [exp]	3.0	0.9344
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	3.5	0.9286
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	4.6	0.9363
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	4.7	0.9328

Compare expression of checked genes

Lus10017686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.