Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 530 / 0 DNAJ heat shock family protein (.1) AT4G28480 502 / 3e-180 DNAJ heat shock family protein (.1.2) AT3G08910 442 / 5e-157 DNAJ heat shock family protein (.1) AT5G01390 439 / 1e-155 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 369 / 1e-127 DNAJ heat shock family protein (.1) AT5G25530 369 / 2e-127 DNAJ heat shock family protein (.1) AT1G59725 362 / 3e-125 DNAJ heat shock family protein (.1) AT3G47940 362 / 8e-125 DNAJ heat shock family protein (.1) AT2G20550 294 / 6e-99 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 169 / 1e-49 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013981 [exp] 473 / 1e-168 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 462 / 2e-164 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10005033 [exp] 459 / 3e-163 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 458 / 9e-163 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 377 / 7e-131 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10030803 [exp] 373 / 2e-129 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10041254 [exp] 370 / 1e-128 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10036668 [exp] 367 / 1e-126 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013280 [exp] 355 / 2e-121 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057601 [exp] 491 / 7e-176 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 491 / 1e-175 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 479 / 4e-171 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 469 / 3e-167 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 456 / 7e-162 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 404 / 1e-141 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 393 / 1e-137 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 385 / 2e-134 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 368 / 2e-127 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 365 / 2e-126 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017687 pacid=23155551 polypeptide=Lus10017687 locus=Lus10017687.g ID=Lus10017687.BGIv1.0 annot-version=v1.0 ATGGGGGTTGATTACTACAAGGTACTGCAAGTGGAAAGGAACGCGAGCGATGACGATTTGAAGAAGGCTTACAGGAAGCTGGCTATGAAGTGGCATCCTG ATAAGAATCCCAACAATAAGAAGGATGCTGAAGCCAAGTTCAAGCAAATCTCCGAGGCTTATGAGGTTCTGAGCGACCCGCAGAAGAAGGCAGTGTATGA TCAGTATGGTGAAGAGGGTCTAAAGGGTCAAGTCCCACCACCCAATGCTGGTGGTGGAGCTTCCTACTTCTCCGGGGGAGAGATGCCATCTTCATTCAGG TTCAACCCTCGCAGCGCCGACGATATCTTCGCAGAGTTCTTCGGCCATTCAACCCCTTTCGGAGGAGGAAGTAGAGGAGGGTCAAGGTTTCCAAGTGGCT TATTTGGTGATGATATCTTTGGGTCTTATGGTGGTGACGCTGGAGGAGGCCACATGCACCACACTTCTTCTGCTCCTAGAAAGGCTGGTCCAATTGAGAA TAAACTGCCATGCAGCCTTGAGGATCTTTATAAAGGCACTACCAAGAAGATGAAGATCTCTAGAGAGATCCTTGATGCTAGTGGCAAGACAATGCCGGTG GAAGAGATACTAACAATCGACATAAAGCCGGGATGGAAGAAGGGAACCAAGATCACGTTCCCTGAGAAGGGTAACGAACAGCCAAACGTCATACCGGCTG ACCTTGTTTTCATCATCGACGAGAAGCCACACCCTGTGTTTGCCCGAGAGGGAAATGACTTGATCGTCACGCAGAAGGTCTCGTTATCGGAGGCGTTGAC AGGCTACATCGTCAACCTCACAACCTTGGACGGTAGAACCTTGACGATCCCGATCACCAATGTGATCCATCCTACGTACGAGGAAGTCGTCCTAAGGGAA GGGATGCCGGTTCCACGAGATCAGACGAGGAGAGGAAACTTGAGGATCAAGTTCAACATCAAGTTCCCAACCCGGCTGACTGCAGAACAGAAGGTTGGCA TCAAGAAGCTCCTCCAAGGTGCCTAA
AA sequence Show only first row Show all	>Lus10017687 pacid=23155551 polypeptide=Lus10017687 locus=Lus10017687.g ID=Lus10017687.BGIv1.0 annot-version=v1.0 MGVDYYKVLQVERNASDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYEVLSDPQKKAVYDQYGEEGLKGQVPPPNAGGGASYFSGGEMPSSFR FNPRSADDIFAEFFGHSTPFGGGSRGGSRFPSGLFGDDIFGSYGGDAGGGHMHHTSSAPRKAGPIENKLPCSLEDLYKGTTKKMKISREILDASGKTMPV EEILTIDIKPGWKKGTKITFPEKGNEQPNVIPADLVFIIDEKPHPVFAREGNDLIVTQKVSLSEALTGYIVNLTTLDGRTLTIPITNVIHPTYEEVVLRE GMPVPRDQTRRGNLRIKFNIKFPTRLTAEQKVGIKKLLQGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	0	1
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	1.0	0.9458
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	2.0	0.9045
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	2.4	0.9274
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	3.0	0.9135
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	5.0	0.9015
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	5.5	0.8832
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	6.0	0.8582
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	7.3	0.8424
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	9.5	0.8618
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	10.5	0.8687

Compare expression of checked genes

Lus10017687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.