Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44180 148 / 5e-40 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 146 / 2e-39 HD HB-1 homeobox-1 (.1) AT4G03250 90 / 4e-20 HD Homeodomain-like superfamily protein (.1) AT1G17920 50 / 8e-07 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 47 / 7e-06 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G79840 45 / 4e-05 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033644 [exp] 480 / 9e-174 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10039870 [exp] 198 / 1e-57 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 194 / 6e-56 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 147 / 5e-43 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 143 / 2e-41 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10015325 [exp] 132 / 2e-34 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 127 / 7e-33 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10016078 [exp] 56 / 1e-08 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012302 [exp] 50 / 1e-06 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016200 [exp] 217 / 5e-64 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 202 / 6e-59 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.004G048675 [exp] 154 / 4e-42 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 147 / 7e-40 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.009G071700 [exp] 64 / 1e-11 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 63 / 4e-11 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.012G038500 [exp] 49 / 2e-06 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G034100 [exp] 48 / 5e-06 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.014G173300 [exp] 44 / 8e-05 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.001G184100 [exp] 44 / 9e-05 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10017688 pacid=23155452 polypeptide=Lus10017688 locus=Lus10017688.g ID=Lus10017688.BGIv1.0 annot-version=v1.0 ATGGAGGATTCTCGTCGCCGCTCTTCTTCACCTCCTGCCGCCGGTGACGCGGAGGTTTACCAGACAAAGAACAAGAAGACGAAGAAACCCGATGTGGAAA ACAAGTCCAAGCGCAAACTCAAAACCGCTTACCAGCTGGAGGTTCTCGAGAAAACTTACTCTGAGGTAACGTACCCGTCGGAGGCAGTAAGGGCTGGGCT ATCGGAGCAGTTAGGGCTATCCGATAGACAGTTGCAGATGTGGTTCTGTCACCGGCGGGTTAAGGACCGGAAACGGCAACACGAGGATCCTCCATCGCCT GTGGAGGAAATGGAAGCTGCAAGTGAGGCATGCAGGAAGCATTCACCAGCATCTGCTTCCCGCTCGAATTCGCTTGGTATGGATCCGCCGTCGCGTCCAT GGAGTCTCAGCACTGCTGAGGTGGCTGTTCCGAGGAATGGTGCTCATTTATCAACTGTGGAAAGGTACTATGAACCGAGACGGTCGGTCGCAGAGCTCAG AGCAATGTTGTTTGTTGAGGAACAATTGGAGGAACCAATGAGGGAGGATGGTCCTGTGCTTGGTGTTGAATTTGACCCCTTGCCGCCGGATGCATTTGCT GAACCTATGCGGACTACTGCGATAGTGGTGCATGAGACGGCACTGGCACGGCATCTCGGACCCAACATGTACGAACAGTATGATCTTAAATCAATCAAGC AGCCGAAATGGTTATCGAGAGATCAATGTAGTAAGAGGAGAAGCCTGCACAAACAGCAGATGCAGACCCTAAATCCAAGTCACAAGAAGTACAGCGATCG GAGTCAATCCGACGACAGCTAA
AA sequence Show only first row Show all	>Lus10017688 pacid=23155452 polypeptide=Lus10017688 locus=Lus10017688.g ID=Lus10017688.BGIv1.0 annot-version=v1.0 MEDSRRRSSSPPAAGDAEVYQTKNKKTKKPDVENKSKRKLKTAYQLEVLEKTYSEVTYPSEAVRAGLSEQLGLSDRQLQMWFCHRRVKDRKRQHEDPPSP VEEMEAASEACRKHSPASASRSNSLGMDPPSRPWSLSTAEVAVPRNGAHLSTVERYYEPRRSVAELRAMLFVEEQLEEPMREDGPVLGVEFDPLPPDAFA EPMRTTAIVVHETALARHLGPNMYEQYDLKSIKQPKWLSRDQCSKRRSLHKQQMQTLNPSHKKYSDRSQSDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44180	HD		Homeodomain-like transcription...		Lus10017688 [exp]	0	1
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	5.7	0.8677
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	17.0	0.8383
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	18.5	0.8068
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	23.2	0.8625
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	24.0	0.7982
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	27.5	0.8598
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	32.8	0.8414
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	37.5	0.8477
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	40.8	0.8123
AT5G08320			unknown protein		Lus10017382 [exp]	42.9	0.8270

Compare expression of checked genes

Lus10017688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.