Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46090 148 / 1e-44 Protein of unknown function (DUF679) (.1) AT4G18425 136 / 7e-40 Protein of unknown function (DUF679) (.1) AT4G24310 114 / 1e-31 Protein of unknown function (DUF679) (.1) AT3G02430 111 / 3e-30 Protein of unknown function (DUF679) (.1) AT3G21520 94 / 1e-23 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT3G21550 91 / 1e-22 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT4G28485 82 / 1e-19 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1) AT1G09157 78 / 2e-17 Protein of unknown function (DUF679) (.1) AT5G39650 74 / 7e-16 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT5G27370 72 / 2e-15 Protein of unknown function (DUF679) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033645 [exp] 265 / 3e-90 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 198 / 8e-64 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 146 / 2e-43 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 145 / 4e-43 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 142 / 6e-42 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 141 / 1e-41 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10039871 [exp] 137 / 1e-41 AT5G46090 122 / 3e-36 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 140 / 4e-41 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 137 / 3e-40 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016300 [exp] 171 / 7e-54 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 155 / 1e-47 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 147 / 4e-44 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 109 / 2e-29 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 104 / 2e-27 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 99 / 1e-25 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.013G116300 [exp] 94 / 2e-23 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 91 / 3e-22 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.008G115100 [exp] 89 / 6e-22 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 90 / 7e-22 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10017689 pacid=23155569 polypeptide=Lus10017689 locus=Lus10017689.g ID=Lus10017689.BGIv1.0 annot-version=v1.0 ATGGATGACGTTGAAGCACAACATAAGCAACCCCCTTTGGAAGATCAAGCAACACCACCATCACCACCGCCTTCGGAGCTGTCTCCACTGCTGAGGAAGA AGGCGAAACGACCGTTGAAAAAGGCGATCAAGAAGACATTCAAAGCGACCGAGCTCCTTACAAAGCTTCTCCCGACAGGATCGGTCCTGACCTTCCAAAT CGTGTCACCTATCCTCACGGCCCAGGGCAAATGCCCGACTCCGGCAAGCAGGTTGTTGGTCCTCGGACTCTTGTCCCTCTGCGGCCTCTCGTGCTTCTTC CAGTGTCTGACGGACAGCTTTAAGGATGCCAAGGGGAAGATCAGGTACGGGGTGGCCACGCTCAACGGTCTGTGGGTTATGGACGGGTCGAAGGCAAAGC TGTACCCGGAGGAAGCGAGCCGGTACAGGCTAAGGTTTGTGGACTTGTTCCACGCGACGACGACCGTGCTGGTGTTTGGCACGGTGGCATTGTTTGATAA GAATGTGGTGAGTTGCTTCTTCCCGGAGCCGACAGAGGACGTCAAGGAGTTGCTCTCTACGTTGCCTTTCGGAATCGGGTTGATCGGGAGCTTGTTGTTT CTCGCTTTCCCGACCAAACGCCACGGAATCGGGACTCCGGTCTCCGACGAATGA
AA sequence Show only first row Show all	>Lus10017689 pacid=23155569 polypeptide=Lus10017689 locus=Lus10017689.g ID=Lus10017689.BGIv1.0 annot-version=v1.0 MDDVEAQHKQPPLEDQATPPSPPPSELSPLLRKKAKRPLKKAIKKTFKATELLTKLLPTGSVLTFQIVSPILTAQGKCPTPASRLLVLGLLSLCGLSCFF QCLTDSFKDAKGKIRYGVATLNGLWVMDGSKAKLYPEEASRYRLRFVDLFHATTTVLVFGTVALFDKNVVSCFFPEPTEDVKELLSTLPFGIGLIGSLLF LAFPTKRHGIGTPVSDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46090			Protein of unknown function (D...		Lus10017689 [exp]	0	1
AT5G65490			unknown protein		Lus10012731 [exp]	12.7	0.6749
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	17.6	0.6091
AT3G53230			ATPase, AAA-type, CDC48 protei...		Lus10001402 [exp]	43.2	0.5134
AT2G15220			Plant basic secretory protein ...		Lus10001609 [exp]	70.0	0.5256
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	78.5	0.5528
AT1G15780			unknown protein		Lus10025451 [exp]	126.0	0.5099
AT3G18790			unknown protein		Lus10008882 [exp]	154.1	0.5087
AT1G21550			Calcium-binding EF-hand family...		Lus10040888 [exp]	159.2	0.4634
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	162.0	0.4930
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	179.9	0.4792

Compare expression of checked genes

Lus10017689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.