Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05970 199 / 6e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033646 [exp] 398 / 2e-143 AT1G05970 204 / 8e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030000 [exp] 229 / 6e-77 AT1G05970 179 / 4e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017690 pacid=23155439 polypeptide=Lus10017690 locus=Lus10017690.g ID=Lus10017690.BGIv1.0 annot-version=v1.0 ATGGATTCGAAAAGTCCAGAAACCGAGTACAAAGCCTTTCTGGAGAAGGTGGCCCGGACTGTGTACATCGATAACCTCTCACCACAAGCCAACGAATCCG TGATAAAAACCGGGTTGGATCAGTTCGGCAACGTGAAGAGCATCTCCTTCATCGCAAACTACATGGACCCGAGGAAAAGCATGCACTGTGCATTGGTCGA GATGGAGGCTTGTGACCAAGCAAGAAACGTCATCGTTATGCTGAGCGAGTCGCCTTTCATGATGGCGGGCATGCCTAGACCGGTGAGGGCAGTCAAGGCT GAGGTGGAGATGTTCGATGATCGCCCGAGCAAGCCCAGTAGGAAGTTACAGTTCAGGTGGGTGGAACCGAAAGACGCGGATTTCAATGTCTTGCAAGAAA TGAAACGTGCTGTCCAAAAGCATGCCGCCGAGGATTCATTCCTGCATAAGGCGCAGCTGGAGGAAGAAGAGAAGCTGCACAGACAGCAGTTGGAGACCCT GAAGGCGAATTACAAGAAGTACGAAATGACGAATGGTGTAATCGGCGATGGTGTAGCTCGTCAGGTTGCGGAGAGATACGGGATGAGAGTTGCAGATGAT CACGATGGTGGTCCTCTTTGA
AA sequence Show only first row Show all	>Lus10017690 pacid=23155439 polypeptide=Lus10017690 locus=Lus10017690.g ID=Lus10017690.BGIv1.0 annot-version=v1.0 MDSKSPETEYKAFLEKVARTVYIDNLSPQANESVIKTGLDQFGNVKSISFIANYMDPRKSMHCALVEMEACDQARNVIVMLSESPFMMAGMPRPVRAVKA EVEMFDDRPSKPSRKLQFRWVEPKDADFNVLQEMKRAVQKHAAEDSFLHKAQLEEEEKLHRQQLETLKANYKKYEMTNGVIGDGVARQVAERYGMRVADD HDGGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	0	1
AT4G32605			Mitochondrial glycoprotein fam...		Lus10034136 [exp]	2.4	0.7669
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	3.0	0.8065
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	7.5	0.8009
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	12.0	0.7605
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10012352 [exp]	14.0	0.7105
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	16.2	0.7315
AT5G41270			unknown protein		Lus10035306 [exp]	16.2	0.7861
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	17.3	0.7533
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	17.9	0.7517
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	18.0	0.7083

Compare expression of checked genes

Lus10017690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.