Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10385 845 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT5G49830 708 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10180 300 / 1e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033648 [exp] 1365 / 0 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10034843 [exp] 738 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 732 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 732 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033387 [exp] 454 / 5e-150 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10040609 [exp] 308 / 2e-93 AT1G10180 854 / 0.0 unknown protein Lus10018297 [exp] 306 / 7e-93 AT1G10180 858 / 0.0 unknown protein Lus10022896 [exp] 177 / 4e-46 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 143 / 2e-35 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063700 [exp] 951 / 0 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.010G249900 [exp] 746 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 729 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.012G120000 [exp] 313 / 2e-95 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 309 / 1e-93 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 261 / 2e-77 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 182 / 1e-47 AT1G10180 215 / 8e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10017692 pacid=23155544 polypeptide=Lus10017692 locus=Lus10017692.g ID=Lus10017692.BGIv1.0 annot-version=v1.0 ATGAGAGAATTGAGCAACGGAGACTCGGCGGAGCTGGAAGAGAACCTTCCGCTCAAAGACCGCCTCAAAGCTTTCAAGAGCTCCAGCTTCGATCCCGACG CTTATTTCACCACGCGATGTCAGACGATGAACGAGAAGGAAATTCGTCACCTGTGTTCGTACCTCATCGAGCTGAAGAAAGCCTCCGCCGAGGAAATGCG GAAGAGCGTCTACGCCAATTACGCCGCCTTCATCCGGACATCAAGGGAGATCACAGATTTGGAAGGGCAGCTAATGTCGATGAGGAATCTTCTGTCGAAC CAGGGGAATCTAGTACACGCACTAGCCGAACAAGAACAAATCGACTCGTTATGGGTCGGTTCAGATCAGACATTGAAAGAAGATCTATCTCAAATCGACA AGATGGAGCTTTCCAAAACAGAGGAATGGCTGATGGAGTTCTCCAACACTCTGGACGTCCTACTGGCCGAGAGGCGGATGGACGAAGTCATGAAAGCACT CCTCAAAGGTGAAATGCTGGTCGAAGATGCCAGCGAAGAGCCCGATTTGAACCCCAAGTTCCTCGCCGCAATGCAGGCTTCGATCACCGAGCAAAGGATG AGGTTTGCTGACCAGCTCTCCGATACGATCAGCCAGCCCTCGACTCGAAGGCTGGAACTTCGGTCCGCTGTCCAAGCCCTCAAGGGGCTTGGGGACGGCC CTCGGGCCCACACATTGTTGCTACAGTACCACCAGAAGAAGCTACAGTCTTCCCTGAGGAGCATCCGGTCTTCTTCAAGTGGTTCCTACGGAGGCGGTGG GAGCTCTTACGCAACGGTAATTTCGCAGTTTGTATTCTCCACAATCGCTCAAGCAATGAGCGATTCGATGACAGTGTTCGGAGAAGAGTCCGCCTACACA TCCGAGCTTGTCTCCTGGGCTGTGAAGCAGACTGAGTCGTTTGCTCTGCTTCTGAAGAGGCATGTCCTGGCTTCGTCAGCCGCCACAGGCGGACTTAGGG TCTCTGCAGACTGTATGCAGGTGTGTTTGGGACACTGTTCGCTGCTCGAAGCTCGAGGATTGTCGCTTTCGCCTGTGCTTTTGAGGGTGTTTCGATCGAG CGTCGAGCAGGCGTTCCATGCTAATTTGAAGAAGATTGAACATAGCACTGCTGCATTGGCGGTTTCGGATGACTGGGTTCTTTCCTTTTCTCCTGCTGGT GGAAAAGCCATGGCTTCCCCTGCACCTCTTAGTAATTCTGTGGGATCACAGCCAAAGCTTTCGTCCAGTGCCAACAAATTCAACTCAATGGTCCAGGAAT TCCTCGAAGATATAGTACCACTGGAGTGTCTGCAGCTGGACGGGCCAGCGCTCGAAGGCGTTCAGCGCGTCTTCAACTCGTACGTCGATCTGTTAATCCA GGCATTACCGGGCTCAACCGATACCGAGGAGAACCTGGAAGGTTTGGGCAGGGTTGTTCGACCGGCAGAAACAGAAATACAGCAACTAGCATTGCTAGCA AATGCATCACTGTTAGCAGACGAACTTCTTCCCCGTGCAGCTACGAGGCTTTTATCATCCAACCATAGAATAGATGAACAGTCCAGGAGGCAATCGGACA AGCCGACTCATCTTCCCGAGCAAAGGGAATGGAAGAGGAAGCTTCAGAGATCCGTGGATCGATTACGAGATAGCTTCTGCAGACTGCATGCTCTGGAGCT TATCTTTACTGACGAGGGCGACACTAATCTGAATGCACACACTTACACCAGTATGGACGATCACACTGAGGAGCCTGAATGGTTCCCATCTCCCATTTTT CAGCTTGTGTTCACGAAAATTACGAACTTGGCAAGCGTAGCGACGGATGTGTTTGTGGGTAGGGAGAGATTCGCAACTGTTCTGTTGATGAGACTGATGG AGACCATAATCCTTTGGCTCTCTGATGATCAAGCATTCTGGGAAGAGATTGAGCAAGGAGCCAAACCATTGGGGCCTTTTGGCCTTCAACAGTTGTATTT GGACATGGAGTTCGTGTTGATCTTCGCATCGCAAGGACGCTACTTGTCTAGAAGTCTACATCAAGTCATTAAAGACATCATAGCGAGAGCGATCGATGCT GCATCAGCTACTGGTGTAGATCCATACAGTGCGTTGCCTGAGGAGGATTGGTTCAATGAGGTCTCCCAGATAGCCATCAAAATGCTGTCCGGGAAATCGG AGTTTGCGAATATGGATCGAGAGGTTGCTAGCCCTACTGCATCGATCTCAGCATCATCTGTGATATCAGATGCTAACTAG
AA sequence Show only first row Show all	>Lus10017692 pacid=23155544 polypeptide=Lus10017692 locus=Lus10017692.g ID=Lus10017692.BGIv1.0 annot-version=v1.0 MRELSNGDSAELEENLPLKDRLKAFKSSSFDPDAYFTTRCQTMNEKEIRHLCSYLIELKKASAEEMRKSVYANYAAFIRTSREITDLEGQLMSMRNLLSN QGNLVHALAEQEQIDSLWVGSDQTLKEDLSQIDKMELSKTEEWLMEFSNTLDVLLAERRMDEVMKALLKGEMLVEDASEEPDLNPKFLAAMQASITEQRM RFADQLSDTISQPSTRRLELRSAVQALKGLGDGPRAHTLLLQYHQKKLQSSLRSIRSSSSGSYGGGGSSYATVISQFVFSTIAQAMSDSMTVFGEESAYT SELVSWAVKQTESFALLLKRHVLASSAATGGLRVSADCMQVCLGHCSLLEARGLSLSPVLLRVFRSSVEQAFHANLKKIEHSTAALAVSDDWVLSFSPAG GKAMASPAPLSNSVGSQPKLSSSANKFNSMVQEFLEDIVPLECLQLDGPALEGVQRVFNSYVDLLIQALPGSTDTEENLEGLGRVVRPAETEIQQLALLA NASLLADELLPRAATRLLSSNHRIDEQSRRQSDKPTHLPEQREWKRKLQRSVDRLRDSFCRLHALELIFTDEGDTNLNAHTYTSMDDHTEEPEWFPSPIF QLVFTKITNLASVATDVFVGRERFATVLLMRLMETIILWLSDDQAFWEEIEQGAKPLGPFGLQQLYLDMEFVLIFASQGRYLSRSLHQVIKDIIARAIDA ASATGVDPYSALPEEDWFNEVSQIAIKMLSGKSEFANMDREVASPTASISASSVISDAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	0	1
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	3.6	0.9159
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	3.7	0.8952
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	5.1	0.9153
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	5.1	0.9159
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	5.5	0.8904
					Lus10039435 [exp]	6.0	0.8521
					Lus10033071 [exp]	6.2	0.9159
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	6.2	0.8489
					Lus10003695 [exp]	7.2	0.9159
					Lus10003774 [exp]	8.1	0.9159

Compare expression of checked genes

Lus10017692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.