Plant FIBer expression Database

Lus10017694 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54680 62 / 1e-11 proteophosphoglycan-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033654
[exp]
255 / 3e-86 AT3G54680 77 / 7e-17 proteophosphoglycan-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G120700
[exp]
87 / 8e-21 AT3G54680 102 / 1e-26 proteophosphoglycan-related (.1)
Potri.013G072200
[exp]
84 / 7e-20 AT3G54680 96 / 3e-24 proteophosphoglycan-related (.1)
PFAM info
Representative CDS sequence
>Lus10017694 pacid=23155527 polypeptide=Lus10017694 locus=Lus10017694.g ID=Lus10017694.BGIv1.0 annot-version=v1.0
ATGGCAAAAACCAACAAGTACGCCTCGATCAACTTCAACAATGTCTACGAGAAGAATCTGATCAGCGGCGCCAACGGTGTCAAACACAGCGACGGGGTCC
ATTCTACGGGATATCTCCACAAGAATCACCTCCACACTTCGTCTTCGACGACGACGGCAAGATCCAATGGCCGGATGCTCGTTCTGACCCGACCCACTTC
CAAACCCGTGTCATCCACCTCCCCCCCTGTCGTTTCCCCTTTGAAGCCGGCTCAAGATCCCACTCGGGTCAATTCGGACTCGGATCCGATTTCCCTCCGC
CCGCTTGGAAAAACCGGAGGCGGCGGTGGCGGCTCTTTTGCCAATCCTCCGATTGTAGCAGCTTCAACATCGCCCAAGCCGGAGAAGTTTGTTCCGCCGC
ATCTTAGGCCGGGTTTCGTCGCTAGGCAGGAGAATTTGAAGGAACCGGGTCAGAATCAGAGTCCTAGGCAGTATTCGAATCAGCATCTCGGATCGTCGCC
GCCTGGTCGGTTTGGAAACGATGGCAGGCCTATTTCAGGTGGTGGGGCGAGGAGAGTTGGTGGCGGGGATGCGGATTCGGGTTTCGTGAACCGACCCAGA
TCCGGTGGGAGCCGTCCTAGCTCAAGTGGATGGTAA
AA sequence
>Lus10017694 pacid=23155527 polypeptide=Lus10017694 locus=Lus10017694.g ID=Lus10017694.BGIv1.0 annot-version=v1.0
MAKTNKYASINFNNVYEKNLISGANGVKHSDGVHSTGYLHKNHLHTSSSTTTARSNGRMLVLTRPTSKPVSSTSPPVVSPLKPAQDPTRVNSDSDPISLR
PLGKTGGGGGGSFANPPIVAASTSPKPEKFVPPHLRPGFVARQENLKEPGQNQSPRQYSNQHLGSSPPGRFGNDGRPISGGGARRVGGGDADSGFVNRPR
SGGSRPSSSGW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54680 proteophosphoglycan-related (.... Lus10017694
[exp]
0 1
AT3G47550 RING/FYVE/PHD zinc finger supe... Lus10034454
[exp]
16.9 0.8042
AT1G14780 MAC/Perforin domain-containing... Lus10041285
[exp]
17.1 0.8077
AT3G01120 AtCGS1, ATCYS1,... METHIONINE OVERACCUMULATION 1,... Lus10030694
[exp]
18.7 0.7940
AT4G21450 PapD-like superfamily protein ... Lus10002595
[exp]
19.7 0.8137
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Lus10018367
[exp]
21.2 0.7849
AT4G32600 RING/U-box superfamily protein... Lus10008106
[exp]
22.4 0.7602
AT1G21380 Target of Myb protein 1 (.1) Lus10028649
[exp]
26.2 0.7863
AT5G01830 ARM repeat superfamily protein... Lus10025244
[exp]
29.5 0.7924
AT4G02340 alpha/beta-Hydrolases superfam... Lus10010293
[exp]
32.6 0.8002
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Lus10022199
[exp]
32.8 0.7898

Lus10017694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.