Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44130 217 / 9e-71 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 215 / 5e-70 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G20520 213 / 5e-69 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G03170 167 / 2e-51 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 147 / 3e-43 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G04780 99 / 8e-25 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT2G45470 72 / 2e-14 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 72 / 2e-14 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G46550 71 / 5e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 58 / 1e-09 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033651 [exp] 326 / 1e-113 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10019929 [exp] 160 / 2e-48 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 158 / 1e-47 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 130 / 1e-36 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 129 / 2e-36 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 128 / 4e-36 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 123 / 5e-34 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036112 [exp] 115 / 8e-31 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036113 [exp] 114 / 3e-30 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120600 [exp] 201 / 2e-64 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.019G093300 [exp] 187 / 7e-59 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.006G129200 [exp] 164 / 6e-50 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.016G088700 [exp] 163 / 7e-50 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 135 / 8e-39 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 134 / 3e-38 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.001G320800 [exp] 132 / 8e-38 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 126 / 5e-35 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.009G012200 [exp] 125 / 8e-35 AT5G60490 167 / 5e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 125 / 1e-34 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10017696 pacid=23155484 polypeptide=Lus10017696 locus=Lus10017696.g ID=Lus10017696.BGIv1.0 annot-version=v1.0 ATGGCATTGTCCAACTCTCTCTTCCTCACTTCCTTCCTACTCATCCTCTCAATCCAAACCAATGCCCAAACGCCCTCAGCTCCGGCCCCCGGTCCACCAG GACCAGTCAACCTAACCGCCATCCTCGAAAAGAGCAACCAGTTCACCACATTCCTCCGCCTCCTCAACACAACCCAAGTCGGAAACCAGATCCAGAACCA GCTCAACAGCTCCACGGATGGAATGACCGTTTTCGCCCCCACCGACAATGCCTTCCAGAACCTCAAGTCGGGCAGCCTCAACGGGCTCTCGAACCAACAG CAGGTCCAGCTGGTCCTCTACCACGTCGCACCCAAATTCTACTCCCTCAGCAGCCTCCTGCTCGTGCCCAACCCGGTCCGGACCCAGGCCTCGGGCCAAG ACGGTGGCGTTTTTGGGCTTAACTTTACTGGTCAAGGGAACCAGGTCAACGTCTCAACCGGAGTGGTCGAGACCCCAATAAACAACCCGCTCAGCCAGAG CATGCCTCTGGCTGTTTACCAAGTGGACAGAGTTTTGCTGCCCGCGGAGCTGTTTGGAGCTCCGGCCCCCGGTGGTGCTCCGAAGAAGACGACGCCATCT TCGTCGGACGCTGATAAACCCGATTCGACGGTCGATTCGGAGCCGGCTGGACCGACTGCGGCTAACAATGGCGCTGGCTCGAAGATTGGAGGGTTTGGAT TGGCCATTGGGTTCGGATTGCTCTGTTCTGGAGCTCTGTTTTGA
AA sequence Show only first row Show all	>Lus10017696 pacid=23155484 polypeptide=Lus10017696 locus=Lus10017696.g ID=Lus10017696.BGIv1.0 annot-version=v1.0 MALSNSLFLTSFLLILSIQTNAQTPSAPAPGPPGPVNLTAILEKSNQFTTFLRLLNTTQVGNQIQNQLNSSTDGMTVFAPTDNAFQNLKSGSLNGLSNQQ QVQLVLYHVAPKFYSLSSLLLVPNPVRTQASGQDGGVFGLNFTGQGNQVNVSTGVVETPINNPLSQSMPLAVYQVDRVLLPAELFGAPAPGGAPKKTTPS SSDADKPDSTVDSEPAGPTAANNGAGSKIGGFGLAIGFGLLCSGALF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	0	1
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	1.0	0.9818
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	1.4	0.9765
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	6.9	0.9669
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	8.9	0.9636
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	10.5	0.9481
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	10.8	0.9538
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	11.0	0.9612
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	11.0	0.9618
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	11.8	0.9607
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	12.2	0.9319

Compare expression of checked genes

Lus10017696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.