Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 118 / 7e-30 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G48270 118 / 7e-30 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT5G25140 117 / 1e-29 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25180 117 / 2e-29 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G07990 116 / 4e-29 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26230 116 / 4e-29 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT2G24180 115 / 6e-29 CYP71B6 cytochrome p450 71b6 (.1) AT3G26270 115 / 6e-29 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT1G13110 114 / 2e-28 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT4G13310 112 / 3e-28 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024331 [exp] 364 / 1e-123 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10033633 [exp] 287 / 1e-93 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10017676 [exp] 284 / 1e-92 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10017677 [exp] 283 / 6e-92 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033634 [exp] 278 / 3e-90 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10029035 [exp] 188 / 1e-55 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 184 / 6e-54 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 182 / 2e-53 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 174 / 2e-50 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 175 / 1e-50 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 167 / 1e-48 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 169 / 2e-48 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364900 [exp] 164 / 2e-48 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 166 / 2e-47 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074900 [exp] 160 / 5e-45 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 159 / 1e-44 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 155 / 2e-43 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365366 [exp] 143 / 2e-40 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.007G074300 [exp] 145 / 7e-40 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017697 pacid=23155472 polypeptide=Lus10017697 locus=Lus10017697.g ID=Lus10017697.BGIv1.0 annot-version=v1.0 ATGCTTGATCCGTCCCTCGAAGGATTCGCGATCGACCTATCCCCGAAGGTTTTCGAGAAGACATACAACATAATATCGAGGGCGATGTTCGGGGATGTGT GGTCGGAGAAAGAAGAGTTCGTAAAGGCGGCGAAGGAGATCGTGGAGTACGGTGGAGGGTTCGGGATCTCCTACTTGTTCCCTTCTTGTAAGTTGGTTCA GAGACTGTTTGGCATGGAAGATTGGATGAACAAGATTCATCTCACTATTGATCGGTTAACTGAAGGCATCATCACCCAACATAGAAACAAGATGAAATTT GACCAAAGCAGTCATGAAGATCTACTGGGTGTTCTCTTAGATCTTCAGCAAGATGAGACTGGTCTTGGTTTCAAGTTATCCGACAACTGCATCAAAGGTT TCCTTCTGGACATATTCCTCGCCGGAAGCGAAACACCATCGACAATGATAGAATGGACAATGTCGGAGATGGTAAGACACCCACAAGTGTTTCGAAAGGC ACAACCCGACGTAAGAAAACTCTTCGCCGACAAAGGTCATGTGAACGAGACCGAGATCCACAAGCTCGGCTACTTAAAACTCTTCGTCAAAGAATCCCTC AGATTACACATTCCAGCGCCTCTATTGCTCCCCAGAGAGTGCAGGGAGGAGTGTCGAGTTGGCGGCTACGACATTCCTTTGAAGACCACGGTGGCGGCTA CGACATTCTTTACTTCTACACCAAGCTCAAGAGAAAGAAGCTCTCCAACGGCGAGAGGAAGTCGTCGAGGATCGACCGAGCAGTGGCCAACGGGAAAGGT GGCACGTGGCATCAGGAGTCCGTTTCCAAGATCCAAGTCCGCCATCATCTCATCACCAAGAAGAAGAACCAACAAGGTACCTTTACGTACTCTTGTAATA TGGCGGGTACCTTTACGTAATTGTACATGA
AA sequence Show only first row Show all	>Lus10017697 pacid=23155472 polypeptide=Lus10017697 locus=Lus10017697.g ID=Lus10017697.BGIv1.0 annot-version=v1.0 MLDPSLEGFAIDLSPKVFEKTYNIISRAMFGDVWSEKEEFVKAAKEIVEYGGGFGISYLFPSCKLVQRLFGMEDWMNKIHLTIDRLTEGIITQHRNKMKF DQSSHEDLLGVLLDLQQDETGLGFKLSDNCIKGFLLDIFLAGSETPSTMIEWTMSEMVRHPQVFRKAQPDVRKLFADKGHVNETEIHKLGYLKLFVKESL RLHIPAPLLLPRECREECRVGGYDIPLKTTVAATTFFTSTPSSRERSSPTARGSRRGSTEQWPTGKVARGIRSPFPRSKSAIISSPRRRTNKVPLRTLVI WRVPLRNCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	0	1
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	9.8	0.9983
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	14.3	0.9980
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10012842 [exp]	15.9	0.9904
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	17.5	0.9980
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	20.2	0.9980
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	20.4	0.9966
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016459 [exp]	20.4	0.9423
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10001773 [exp]	21.3	0.9297
					Lus10015929 [exp]	22.6	0.9979
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	23.7	0.9852

Compare expression of checked genes

Lus10017697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.