Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 204 / 3e-62 O-methyltransferase family protein (.1) AT4G35150 179 / 2e-53 O-methyltransferase family protein (.1) AT5G54160 164 / 5e-47 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 149 / 2e-41 O-methyltransferase family protein (.1.2) AT1G77520 141 / 2e-38 O-methyltransferase family protein (.1) AT1G63140 126 / 9e-33 O-methyltransferase family protein (.1.2) AT5G53810 124 / 5e-32 O-methyltransferase family protein (.1) AT1G77530 123 / 8e-32 O-methyltransferase family protein (.1) AT3G53140 120 / 1e-30 O-methyltransferase family protein (.1) AT1G33030 116 / 3e-29 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 677 / 0 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10018629 [exp] 375 / 2e-129 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10018628 [exp] 356 / 7e-122 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 342 / 6e-116 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10013945 [exp] 331 / 3e-112 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10015311 [exp] 330 / 1e-111 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10017691 [exp] 315 / 1e-105 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10038331 [exp] 307 / 4e-100 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10006691 [exp] 300 / 1e-99 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093000 [exp] 534 / 0 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 507 / 0 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 428 / 3e-150 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 423 / 3e-148 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 421 / 1e-147 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 420 / 3e-147 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 414 / 1e-144 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 385 / 1e-133 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 374 / 4e-129 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 374 / 1e-128 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10017699 pacid=23155449 polypeptide=Lus10017699 locus=Lus10017699.g ID=Lus10017699.BGIv1.0 annot-version=v1.0 ATGTTGAACTTGGGAGATGGAAAGCACGATGCTGAGCTTCTCAAAGCTCAAGCACACATATGGAACCACATCTTGAACTTCATCAACTCCACCTCCTTAA AATCGGCCATCCAGCTAGGCATCCCGGACACAATCCACCACCACGGCAAGCCCATGACCCTCTCCGAACTATCGACCACCTTGTCCATCAACCCGGCCAA GACCCGCTTTTTATCCCGCCTCATGCGCCTCCTCGTCCACTTCCAATTCTTCGCCCTCGAAAAAGTCAACAATTCAGAACCTGCCCACCAAAAGGAGCAA AAAGAAGAAGAAGAAGAAGAAGAAGAAGGATATGTCTTGACAAACACTTCTCAGCTCCTTCTCAAGGATAACCCGCTCAGCATGACACCCTTTCTCATGG CCATACTGGACCCCATCCTCCTCAAGCCATGGCACCACGTCAGCGAGTGGTTCGGTAACGATGATACGACGCCGTTTGACACGGCCCACGGGACGACGTT CTGGGAGTTCGCCGGAGATCAGCCGCAGCTGAATGGGTTCTTCAACGACGCTATGGCTAGTGATGCCAGGCTGGTGGCCACGGTGCTGGTCAACGAATGT AGGAGCGTTTTCGAAGGGTTGGGGTCGTTGGTTGACGTGGGCGGTGGTACGGGGACGGTGGCGAAGGCCATCGCAGGTGCCTTCCCGGAGCTGGATTGTA CGGTGCTTGATTTGCCGCACGTTGTTGATGGGCTGGAGACCGAGAACTTGAAATTCGTCGGCGGTGATATGTTCGTCGAGATTCCCGCTGCTGACGCCGT TCTATTGAAGTGGATACTGCACGATTGGAACGACGATGAATGTGTGAAGATCCTGAAGAAGAGCAAAGCAGCAATCCAAGGGAGGGAAGGAGGGAAAGTG ATAATAATCGACATGAAAGTCGACAACCAGAAGGCGAACGACGAGTCCATCGAAACCCAGCTCTTCTTCGACATGATGATGATGATACTGGTGACGGGAC AGGAGAGGGACGAGAAGGAATGGGCTAAACTGTTCGTCGATGCTGGCTTCCGCGATTATAAGATCACTCCTATCTTGGGTTTAAGATCGATCATCGAAGT TTATCCTTGA
AA sequence Show only first row Show all	>Lus10017699 pacid=23155449 polypeptide=Lus10017699 locus=Lus10017699.g ID=Lus10017699.BGIv1.0 annot-version=v1.0 MLNLGDGKHDAELLKAQAHIWNHILNFINSTSLKSAIQLGIPDTIHHHGKPMTLSELSTTLSINPAKTRFLSRLMRLLVHFQFFALEKVNNSEPAHQKEQ KEEEEEEEEGYVLTNTSQLLLKDNPLSMTPFLMAILDPILLKPWHHVSEWFGNDDTTPFDTAHGTTFWEFAGDQPQLNGFFNDAMASDARLVATVLVNEC RSVFEGLGSLVDVGGGTGTVAKAIAGAFPELDCTVLDLPHVVDGLETENLKFVGGDMFVEIPAADAVLLKWILHDWNDDECVKILKKSKAAIQGREGGKV IIIDMKVDNQKANDESIETQLFFDMMMMILVTGQERDEKEWAKLFVDAGFRDYKITPILGLRSIIEVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	1.0	0.9980
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	10.1	0.9946
AT4G34215			Domain of unknown function (DU...		Lus10001128 [exp]	12.6	0.9733
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	14.0	0.9970
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	16.6	0.9850
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	18.1	0.9967
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	20.3	0.9853
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	20.4	0.9966
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	20.4	0.9848
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	20.9	0.9355

Compare expression of checked genes

Lus10017699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.