Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 332 / 1e-109 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 326 / 6e-108 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033657 [exp] 839 / 0 AT1G28520 339 / 1e-112 vascular plant one zinc finger protein (.1.2) Lus10005274 [exp] 285 / 1e-89 AT1G28520 529 / 0.0 vascular plant one zinc finger protein (.1.2) Lus10013950 [exp] 248 / 6e-80 AT1G28520 371 / 6e-128 vascular plant one zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092800 [exp] 415 / 9e-143 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2) Potri.013G123100 [exp] 386 / 2e-131 AT1G28520 480 / 1e-167 vascular plant one zinc finger protein (.1.2) Potri.004G050900 [exp] 346 / 4e-115 AT1G28520 689 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.011G060000 [exp] 328 / 4e-108 AT1G28520 682 / 0.0 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017700 pacid=23155474 polypeptide=Lus10017700 locus=Lus10017700.g ID=Lus10017700.BGIv1.0 annot-version=v1.0 ATGGGGGGTGTTTTAGCAGGGTTTCCAATGCAGAACGGCCAGAAGAGCAAGTCTCACCATCACATCAAGGACATTGCAAAGAACTGGGTTAATGATCATG AAGGAAGGCTATCTGACCTTCGAGCTGCTGTTAGGGAAGGCCGTCAGAGAGACTTTGAAGTTTTGGCGGAGCAAGTCTTTCAAAGCATCGGCGAATTGAG AACTGAACTCGACGCGCCTACCCCTGCCTCCTCTTTGCTTGTCGAAGATGATGCTACCAGTGTACCGGCACAGTTCCCAGTTATGGAGCCTCAACATGGT ACAGAGCAAATCAATGAAAGCCATCCTCTTGGTGATTTCACAGCATATCATGATGGTTTCTTGGGAAGTGCTGGCACTCAGAATCATGATTTTCATGGAT TCGATCAAACTGCCGGAGGCTTTCTTGATGCGTTTGATAGTATAGAGACTAAACCCTCGGATTTAAGTGCCTACTTTGACAGTGATCAATATATTGACTT TGACTATGGGCTGCCCGTCGACATTAATCCTAATAAAGGTTTTATCAAGGAAACCCAATCGAGCAAGCCATCTTACGTCAGTCCTCCTCCTTCAGCCTTC ATGGGTCCGAAATGTGCACTCTGGGATTGCACCAGACCAGCTCAAGGATCTGAGTCATCCATGGAGTACTGCTGCAGCTTACACTGTGATGCAGCTGTTA GTGATGGCGGCCCAGGAAGGCCACCAACTGTGCGACCTAAGGGGATTCGTATGAAAGACAATTTTCTATTCGATGCTCTTACTGCAAAGATACAGGGGAA GGAGGTTGGCATTCCTCAGTGTGTAGGAGCTGCTAGTACAAGGTCGCCATGGAACGCCCCTGATCTGTTTGATATTTCCTTATTCGAGGAGGAAACTTTA CGGGAATGGGTATTTTTCGACGAGCCAAGAAAGGCCTACGACTCCGGAAGTAGGAAGCAGAGATCGCTGCCAGACTACAAGGGACGTGGGTGGCACGAAT CGAGGAAGCAGGTGATCAGTCCGGGGTGCCAGAAGAGATCTTACTACATGGACCCACAACCTAGTAGCAGCCACGAGTGGCATCTGTACGAGTACCAGGT CATAAACAGCGATGCTTCGTGCGCATTGTACAAGCTGGAGTACAAGCTTGCCGAGGCAAAGAAGACCCCTAGAGGGAAAGTCTCGAAAGCCTCTCTTGCC GACCTGCAGATGAAAATGAACAGGCTAAATGCTGATGGAACCCCTGATAGCAGCCCTAGCAACGGCAGCACGAAATTGAATGTGAAATCTGAATCTTCAC CATCCGGTACGGTTCCGTGA
AA sequence Show only first row Show all	>Lus10017700 pacid=23155474 polypeptide=Lus10017700 locus=Lus10017700.g ID=Lus10017700.BGIv1.0 annot-version=v1.0 MGGVLAGFPMQNGQKSKSHHHIKDIAKNWVNDHEGRLSDLRAAVREGRQRDFEVLAEQVFQSIGELRTELDAPTPASSLLVEDDATSVPAQFPVMEPQHG TEQINESHPLGDFTAYHDGFLGSAGTQNHDFHGFDQTAGGFLDAFDSIETKPSDLSAYFDSDQYIDFDYGLPVDINPNKGFIKETQSSKPSYVSPPPSAF MGPKCALWDCTRPAQGSESSMEYCCSLHCDAAVSDGGPGRPPTVRPKGIRMKDNFLFDALTAKIQGKEVGIPQCVGAASTRSPWNAPDLFDISLFEEETL REWVFFDEPRKAYDSGSRKQRSLPDYKGRGWHESRKQVISPGCQKRSYYMDPQPSSSHEWHLYEYQVINSDASCALYKLEYKLAEAKKTPRGKVSKASLA DLQMKMNRLNADGTPDSSPSNGSTKLNVKSESSPSGTVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	0	1
					Lus10013650 [exp]	2.6	0.8927
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	2.8	0.8555
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	3.7	0.8197
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	3.9	0.8424
					Lus10022938 [exp]	4.2	0.8499
					Lus10008904 [exp]	6.3	0.8047
					Lus10004769 [exp]	6.9	0.8188
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	7.2	0.8458
AT1G52490			unknown protein		Lus10022937 [exp]	7.5	0.7847
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	8.1	0.7883

Compare expression of checked genes

Lus10017700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.