Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 304 / 4e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 291 / 6e-97 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 285 / 2e-94 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06650 285 / 2e-94 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 274 / 2e-90 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 271 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 271 / 5e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04380 269 / 2e-88 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 267 / 1e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001109 [exp] 442 / 1e-156 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000426 [exp] 411 / 4e-144 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 411 / 4e-144 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 374 / 1e-129 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 365 / 7e-126 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001108 [exp] 350 / 5e-120 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 340 / 5e-116 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002894 [exp] 338 / 4e-114 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 334 / 9e-114 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 327 / 6e-111 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 321 / 9e-109 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 305 / 1e-102 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 301 / 9e-101 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 290 / 2e-96 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 279 / 3e-92 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 258 / 7e-84 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 249 / 2e-80 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 246 / 3e-79 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 241 / 2e-77 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017701 pacid=23155543 polypeptide=Lus10017701 locus=Lus10017701.g ID=Lus10017701.BGIv1.0 annot-version=v1.0 ATGCCACCACATTTGCTAGACGAAGGACCCTCGTTTTCACCCGACGATCCGGACTTCATTTTCCCGGTCATAGACCTCCAAGGGTCCGGGGCCGGCCAAT TACATGATCTCGAGAAGCGGAAGCGAATAGTGGAGAAAATCAGGGAGGCGTCCGAGACATGGGGTTTCTTCCAGATAGTGAATCATGGAGTCCCTGCAAA CATCCTGGAAAGGATGAGTGCAGCGACCCGCGGGTTTTTCGAAGAGAAAGTTGAGCATAAGCGGAAGTATTTTGGGTTTGACGTGGCCAAGAAAGTCAAC TACACGAGTAACTTCGATTTGTACAATCAACCTTTTGCGATATGGGGGGATGCCATCCTTTACCACATGACGCCGGATCCTCCGTCGCCGGAGGAAATTC CGGCTTGCACAAGGGAAATTGTGCCGGAATTTACAGAGGAGATGGTGAACTTGGGGGAGCTTCTTTTCGAGTTGTTGTCGGAGTCGTTGGGCTTGCCATC GAACCATTTGAAGGAAATGGACTGCATGGAAGTGCTGGGATTAGCCGGGAATTACTACCCGGCTTGTCCCCAACCGAAGCTCACCCTCGGATCCGTCCAG CATGCCGATCTGTATTTTCTCACCGTTATTTTGCAGGATCAGATCGGAGGTCTTCAAGTTCGTCGAAAGAACCACTGGGTCGATGTGCCTTTTGTTCCCG GCGGTTTGGTGGTCAACGTTGGAGATATGCTTCAGCTAATATCGAACGACAAGTTCAAGAGTGTAGTCCATCGCGTTCGGGTAAAGAGTCAAGGGCCAAG AGTTTCGGTTGCTGCTTTCTTTGGTCATTCATCATCGACATCAACGAGAATGTATGGACCCATAAAGGAGCTGTTGTCGGAAGACAATCCTCCGAAGTAC CAAGAAATAACGCTTCGAGAGTTCTTCACCCGATCGTACCAAAAGGGTTTCGATGGTAACTCTCTTCTGCCGCAGCTGAAGCTCTAA
AA sequence Show only first row Show all	>Lus10017701 pacid=23155543 polypeptide=Lus10017701 locus=Lus10017701.g ID=Lus10017701.BGIv1.0 annot-version=v1.0 MPPHLLDEGPSFSPDDPDFIFPVIDLQGSGAGQLHDLEKRKRIVEKIREASETWGFFQIVNHGVPANILERMSAATRGFFEEKVEHKRKYFGFDVAKKVN YTSNFDLYNQPFAIWGDAILYHMTPDPPSPEEIPACTREIVPEFTEEMVNLGELLFELLSESLGLPSNHLKEMDCMEVLGLAGNYYPACPQPKLTLGSVQ HADLYFLTVILQDQIGGLQVRRKNHWVDVPFVPGGLVVNVGDMLQLISNDKFKSVVHRVRVKSQGPRVSVAAFFGHSSSTSTRMYGPIKELLSEDNPPKY QEITLREFFTRSYQKGFDGNSLLPQLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017701 [exp]	0	1
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	5.1	0.9558
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10017702 [exp]	5.8	0.8990
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	7.2	0.9557
AT1G04670			unknown protein		Lus10004041 [exp]	9.2	0.9557
					Lus10007508 [exp]	10.6	0.9557
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	11.8	0.9557
					Lus10040397 [exp]	13.0	0.9557
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	14.0	0.9557
					Lus10027066 [exp]	15.0	0.9557
					Lus10006918 [exp]	15.9	0.9557

Compare expression of checked genes

Lus10017701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.