Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47950 103 / 3e-25 HXXXD-type acyl-transferase family protein (.1) AT3G30280 102 / 8e-25 HXXXD-type acyl-transferase family protein (.1) AT4G15390 100 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT3G26040 91 / 1e-20 HXXXD-type acyl-transferase family protein (.1) AT5G23970 81 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT1G24430 80 / 5e-17 HXXXD-type acyl-transferase family protein (.1) AT1G24420 76 / 1e-15 HXXXD-type acyl-transferase family protein (.1) AT4G15400 56 / 9e-09 HXXXD-type acyl-transferase family protein (.1) AT3G48720 50 / 6e-07 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT2G19070 46 / 1e-05 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000319 [exp] 223 / 1e-70 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 214 / 7e-67 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 202 / 4e-62 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 194 / 2e-59 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 191 / 5e-58 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 181 / 2e-54 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 177 / 1e-53 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10021387 [exp] 143 / 9e-40 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10032497 [exp] 127 / 4e-37 AT4G15390 62 / 2e-12 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034100 [exp] 144 / 2e-40 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 134 / 1e-36 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 134 / 1e-36 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 131 / 2e-35 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 131 / 2e-35 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 130 / 4e-35 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 130 / 4e-35 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 129 / 2e-34 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 122 / 3e-32 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034401 [exp] 96 / 2e-24 AT3G26040 131 / 2e-36 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10017702 pacid=23155521 polypeptide=Lus10017702 locus=Lus10017702.g ID=Lus10017702.BGIv1.0 annot-version=v1.0 ATGGAAGTGTCGGTGATCTCAGTAGAGAACATCAAACCCTACTCAGGAACCAATGATCTCAACCCATTCAAGATCAGCTTGCTTGACCAGCTGATGCCAT CAGTCTACGCACCATTCATCTACTTCTACAGTCATCACAACAACTCATCAGCTTCCTCCAACCTAAAGCTATCTCTTTCCAAGGCACTTGACCTCTTCTA CCCGCTCTCCGGCCGGGCCAGCTCCACCGACCGGCCTATCGTCTTCATCCGCGATTTCGACCAGGGAGTCCCTTTCACCGAAGTTCGATTCCAAGGACAC CGCCTTTCGGACTTCTTGCAGCCGCCGAAGCTGGACCTCCTCAACAGCTTGCTCCCCGTCGATCCTGCTTGCCTCGCCCCGGTGGATGGCCCGCAGGTTG CAGTCCAGCTCAATGTATTTGATTGTGGTGGGGTCGCGCTTGGGTTGAGCTTTTTCCACCGCATCATGGATGGCGGGACCATCGGGGCATTCCTAAAGAC CTGGGCCGCATTTGCGAACCAGGGGGAAGCTGGCGGTGATGACAACAACAGAATGGTGATGAATCCTCCCGATTTGATTAGTGCATCGTTGGTTTTCCCA CCTCGTGAATCCGTGGATCCACCTCAAGAGATGGCAGAGGAAACTGTTGAAATAACAGGTGGGTTTTCTCTCATTTTGAAACACGTGGTGATAATTGGTT TGCGGTTAATGGTTATAGTCGTGATCAACATATATTATTGTGGTTTATAG
AA sequence Show only first row Show all	>Lus10017702 pacid=23155521 polypeptide=Lus10017702 locus=Lus10017702.g ID=Lus10017702.BGIv1.0 annot-version=v1.0 MEVSVISVENIKPYSGTNDLNPFKISLLDQLMPSVYAPFIYFYSHHNNSSASSNLKLSLSKALDLFYPLSGRASSTDRPIVFIRDFDQGVPFTEVRFQGH RLSDFLQPPKLDLLNSLLPVDPACLAPVDGPQVAVQLNVFDCGGVALGLSFFHRIMDGGTIGAFLKTWAAFANQGEAGGDDNNRMVMNPPDLISASLVFP PRESVDPPQEMAEETVEITGGFSLILKHVVIIGLRLMVIVVINIYYCGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10017702 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017701 [exp]	5.8	0.8990
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	10.6	0.8837
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	12.8	0.8827
					Lus10006918 [exp]	15.1	0.8745
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	16.9	0.8745
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	18.5	0.8745
AT1G04670			unknown protein		Lus10004041 [exp]	20.0	0.8745
					Lus10040397 [exp]	21.4	0.8745
					Lus10007508 [exp]	22.6	0.8745
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	23.1	0.8729

Compare expression of checked genes

Lus10017702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.