Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20610 481 / 1e-168 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G36160 474 / 2e-166 Tyrosine transaminase family protein (.1) AT5G53970 468 / 4e-164 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G28420 451 / 7e-157 Tyrosine transaminase family protein (.1.2) AT4G28410 430 / 1e-148 Tyrosine transaminase family protein (.1) AT2G24850 394 / 2e-134 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 387 / 6e-132 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 370 / 3e-125 Tyrosine transaminase family protein (.1) AT1G77670 107 / 2e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 102 / 1e-23 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033659 [exp] 827 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10039861 [exp] 545 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10018626 [exp] 542 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033661 [exp] 531 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017704 [exp] 529 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017705 [exp] 525 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 492 / 1e-173 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10032654 [exp] 460 / 3e-161 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 472 / 5e-161 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 579 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 570 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 568 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 567 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 553 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 530 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 513 / 0 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 251 / 4e-82 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.002G086000 [exp] 119 / 4e-29 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 115 / 6e-28 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10017703 pacid=23155456 polypeptide=Lus10017703 locus=Lus10017703.g ID=Lus10017703.BGIv1.0 annot-version=v1.0 ATGGAAAACGGGACCAAGAGTAACGGACGGCATTTCCAGAACGGAGCCGCCAAACCCAACGGATCTCATGCGGCGGCGGCGAACGGCAACGGGAAACCAA CGCCAGCGCCGAAGCCGACGCCGACCATCCGGGAAGTGAGGTTCGCTTTGATGGACAATCTGAACAAGGAAGACGAAAGGCTGCTGATTGAGCTGGCCCA CGGCGACCCTTCTAGGTTCGAATGCTTCCGTACGGACTCGGCGGCGGAGGACGCCATTGTCGACGCCGTCAGGTCCGGCAAGTACAACTCCTATGCTCCG TCTGCTGGCATTGTTCCGGCTAGAAGAGCAATAGCAGAGTACCTCAGCAAGGACCTCCCGTACACCCTGACGCCAGAGGACGTCTTCATGACCTTAGGCT GCTCCCACGCAATTGAAGTCGCCTTAACAGCCCTGACCCGACCCGGAATATCCAACATCCTCCTCCCCCGACCCGGATACCCATACTACGAAGCCTGCTC CGGCCACCGGAACCTCGAGACCCGCCACTACAATCTCCAGCCCGAAAACGGCTGGGAAGTCGATCTCGAATCCGTTGAGTCCCTAGCCGACGAAAACACC GTCGCCATCGTGATCGTTAACCCCGGAAACCCTTGCGGCAACGTCTACAGCGCTGCCCATTTGGAGAAGATCGCCGAGACTGCTAAAAAGCTCGGGATTC CGGTGATCGCCGACGAGGTGTACGGACACCTGGCGTTTGGGGAAAACCCGTTTGTGGCGATGGGGAGTTTCGGGTCGGTTGCGCCGGTAATTACTCTCGG GTCGATTTCGAAGAGGTGGATTGTTCCTGGGTGGAGGCTTGGTTGGCTCGTCGTCAGTGATCCTAATGATGTTCTGAGAAACTCTGGGCTGGTTAGTAAG ATCCAAGCTAGTCTCTTTACCTCCCCTGATCCTCCGACCTTCATCCAGGCTGCAGTGCCACAGATTCTGGAGAACACAAAGGACAGCTTCTTCATAAAGA TCAATGCGTTGTTGAAGGAGGCTGTAGACCTCTGCTACGAAAGGCTCCATGATATTCCTTGCATTACTTGCCCCACGAAACCTGAAGGCGCCATGTTTGC TATGGTGAAACTGGAGTACTCAGAAATGGAAGGGATTAAGGATGACATGGACTTCTGTCTCAAACTAGCCAAAGAGGAGTCTGTCATTGTCTTGCCAGGG ACGACGGTGGGGCAGAGGAATTGGCTCCGTATAACATTTGCGATTGAGCCTGCAACGCTGGAAGCCGGGCTAGGGAGAATGAAGGCCTTCTGTGAAAGGC ATGCCAAGAAGAAGCAGTAG
AA sequence Show only first row Show all	>Lus10017703 pacid=23155456 polypeptide=Lus10017703 locus=Lus10017703.g ID=Lus10017703.BGIv1.0 annot-version=v1.0 MENGTKSNGRHFQNGAAKPNGSHAAAANGNGKPTPAPKPTPTIREVRFALMDNLNKEDERLLIELAHGDPSRFECFRTDSAAEDAIVDAVRSGKYNSYAP SAGIVPARRAIAEYLSKDLPYTLTPEDVFMTLGCSHAIEVALTALTRPGISNILLPRPGYPYYEACSGHRNLETRHYNLQPENGWEVDLESVESLADENT VAIVIVNPGNPCGNVYSAAHLEKIAETAKKLGIPVIADEVYGHLAFGENPFVAMGSFGSVAPVITLGSISKRWIVPGWRLGWLVVSDPNDVLRNSGLVSK IQASLFTSPDPPTFIQAAVPQILENTKDSFFIKINALLKEAVDLCYERLHDIPCITCPTKPEGAMFAMVKLEYSEMEGIKDDMDFCLKLAKEESVIVLPG TTVGQRNWLRITFAIEPATLEAGLGRMKAFCERHAKKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	0	1
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	1.0	0.9926
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	4.0	0.9908
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	5.7	0.9887
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	5.8	0.9861
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	6.0	0.9888
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	6.2	0.9894
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	6.9	0.9893
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	7.4	0.9892
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	8.8	0.9890
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	10.2	0.9871

Compare expression of checked genes

Lus10017703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.