Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 508 / 5e-180 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 503 / 5e-178 Tyrosine transaminase family protein (.1) AT2G20610 494 / 5e-174 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 469 / 5e-164 Tyrosine transaminase family protein (.1.2) AT4G28410 449 / 2e-156 Tyrosine transaminase family protein (.1) AT2G24850 416 / 4e-143 TAT3 tyrosine aminotransferase 3 (.1) AT4G23590 367 / 2e-124 Tyrosine transaminase family protein (.1) AT4G23600 365 / 8e-124 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT1G77670 114 / 9e-28 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 84 / 2e-17 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033661 [exp] 775 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 766 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10018626 [exp] 647 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 644 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033660 [exp] 589 / 0 AT5G53970 408 / 3e-142 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017703 [exp] 529 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 528 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017934 [exp] 514 / 0 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 497 / 4e-171 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 612 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 595 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 594 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 592 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 588 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 513 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 501 / 3e-177 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 236 / 1e-76 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.002G086000 [exp] 117 / 2e-28 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 116 / 2e-28 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10017704 pacid=23155579 polypeptide=Lus10017704 locus=Lus10017704.g ID=Lus10017704.BGIv1.0 annot-version=v1.0 ATGGGGGAGGAGGGTATTATCGGCATGGAAGAGACCAACGAGAACTGGAAGTTCAAGACCAACACAGAGCTCAACTCTGCTTCTACAGTCACAGTCCGAG GATATCTCACCAGTTTGATGTCCAAGGTGAACAAGGATGAGAAAAGGTCAGTTGTACCCCTGAGCCATGGAGATCCATCTGCTTTCCCTTGCTTCAGAAC GAACCCTGCTGCAGAAGATGCCATGGTGGATTCCTTGAGATCGGCTAAGTTCAATTGCTACTCTCCCCCTACTGGTGTCCCTGCTGCTAGGAGGGCGATT GCGGAACACCTGAGCCGCGATCTCCCGTACAAGTTATCGGAGGACGATGTTTTCCTAGCAGTTGGATGCATCCAATCAATTGAAATTGCATTAGCAGTCC TTGCACGTCCTGGTGCAAACATCTTGCTTCCAAGGCCAGGTTTCCCGCACTACGAAGCGCGCGCTGCAGTGTCCAACCTCGAAGCTCGTCACTTTGATCT ATTACCGGAAAAGGGTTGGGAGGTGGACCTCGAAGGAATCGAAGCTCTCGCAGATGAGAACACTGTCGCCATGGTCGTTATCAACCCCGGGAATCCTTGT GGCTGCGTCTACAGCTACGACCATTTGAAGCGAGTTGCGGAGATGGCCAAGAAGCTTGGGATATTGGTGATTTCTGATGAAGTATACGCCCATCTCACCT TCGGTAGCAACGAGTTTGTTCCAATGGGGGTCTTCGGATCGATTGTGCCTGTCTTGACGCTTGGATCTATCTCGAAGAGATGGATTGTGCCAGGCTGGCG GCTTGGCTGGGTAGTCACAACTGATCCCAATGGCATCCTCACCAAAACCGGGGTGGTCGAGTCGATCAAGGCTTGTTTCGACATCACCTCGGATCCAGCA ACGTTCATTCAGGGTGGAGTGAAGCAACTACTCGAAAACACAAAGGAGGATTTCTTCTTGAGAATCAAAGGCTTGTTGAAGGAATGTGCAGACATTTGCT ACGAAAGGATTCAGAAGATTCCTTATGTCACCTGTCCAGTGAAGCCAGTGGGTTCCATGTTTATAATGGTGAAGCTGAACTTGGAAAAACTCGAGGACAT CGAGGACGACGTGGATTTCTGTAACAAGCTTGCTACAGAAGAATCAGTGATAGCTCTGCCAGGATTAGTTGTCGGTCTGAAGAACTGGCTGCGTATTACC TTTGCGACCGATCAGACTGCTCTTGAAGAAGGGCTCGATAGGATGAACGTGTTCTGTGAAAGGCACGCGAAGAAGCCTTAG
AA sequence Show only first row Show all	>Lus10017704 pacid=23155579 polypeptide=Lus10017704 locus=Lus10017704.g ID=Lus10017704.BGIv1.0 annot-version=v1.0 MGEEGIIGMEETNENWKFKTNTELNSASTVTVRGYLTSLMSKVNKDEKRSVVPLSHGDPSAFPCFRTNPAAEDAMVDSLRSAKFNCYSPPTGVPAARRAI AEHLSRDLPYKLSEDDVFLAVGCIQSIEIALAVLARPGANILLPRPGFPHYEARAAVSNLEARHFDLLPEKGWEVDLEGIEALADENTVAMVVINPGNPC GCVYSYDHLKRVAEMAKKLGILVISDEVYAHLTFGSNEFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWVVTTDPNGILTKTGVVESIKACFDITSDPA TFIQGGVKQLLENTKEDFFLRIKGLLKECADICYERIQKIPYVTCPVKPVGSMFIMVKLNLEKLEDIEDDVDFCNKLATEESVIALPGLVVGLKNWLRIT FATDQTALEEGLDRMNVFCERHAKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	0	1
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	3.0	0.9079
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	6.5	0.8964
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	10.0	0.9049
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	10.2	0.8941
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	10.2	0.8713
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	10.7	0.9066
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	10.9	0.8779
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	11.6	0.8710
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	12.0	0.8828
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	13.4	0.9065

Compare expression of checked genes

Lus10017704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.