Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 506 / 3e-179 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 503 / 5e-178 Tyrosine transaminase family protein (.1) AT2G20610 484 / 8e-170 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 461 / 8e-161 Tyrosine transaminase family protein (.1.2) AT4G28410 443 / 7e-154 Tyrosine transaminase family protein (.1) AT2G24850 404 / 1e-138 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 359 / 2e-121 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 357 / 1e-120 Tyrosine transaminase family protein (.1) AT1G77670 98 / 4e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 81 / 2e-16 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033661 [exp] 783 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017704 [exp] 777 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10018626 [exp] 637 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 626 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033660 [exp] 584 / 0 AT5G53970 408 / 3e-142 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 525 / 0 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017703 [exp] 524 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 523 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10013676 [exp] 506 / 9e-175 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 598 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 584 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 581 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 578 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 575 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 520 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 513 / 0 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 243 / 3e-79 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.005G175400 [exp] 104 / 4e-24 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 103 / 8e-24 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10017705 pacid=23155581 polypeptide=Lus10017705 locus=Lus10017705.g ID=Lus10017705.BGIv1.0 annot-version=v1.0 ATGGGGGAGGAGGGTATTAACGGCATGGACGAGAATTGGAAGTTCAAGCCCAACACAGAGCTCATCTCTGCTTCAAAAGTCACAGTCCGTGGATTCCTCA CCAGTTTGATGTCCAAGGTCAACAAGGACGATGCTGATAAAAGGTCAGTTGTACCCCTGAGCCATGGAGACCCATCTGCTTTCGCTTGTTTCAGAACGAA CCCTGCTGCAGAAGATGCCATGGCGAATTCCCTGAGATCGGCTAAGTTCAATGGCTACTCTCCCCCTGCTGGTGTTCCTGCTGCTAGGAGGGCGATTGCG GACCACCTGAGCCGCGACCTCCCATACAAGTTATCGGAGGACGATGTTTATCTAGCAGTTGGATGCATCCAAGCAATTGAAGTGACATTGGCAGTCCTTG CACGCCCTGGTGCAATCATCTTGCTACCAAGGCCAGGTTTCCCGCACTACGAATCACGCTGTGCAGCGTCCAACCTCGAAGCTCGTCACTTTGACCTGTT GCCGGAAAAGGGTTGGGAAGTGGACCTCCAAGGAGTCGAAGCTCTTGCGGATGAGAACACTGTCGCCATGGTCGTTATCAACCCTGGGAATCCTTGTGGC TCCGTCTACAGCTACGAGCATTTGAAGCGAGTTGCGGAGACTGCCAAGAAGCTCGGGATACTGGTGATCGCTGATGAAGTGTACGCCCATCTCACCTTCG GTAGTAACGAGTTTGTGCCAATGGGCGTCTTCGGATCGATTGTGCCTGTTTTGACGCTCGGATCCATCTCGAAGAGATGGATTGTGCCAGGCTGGCGGCT TGGCTGGGTCGTCACAACTGATCCCAAAGGCATCCTCACCAAAACTGGGATGGTCGAGTCGATCAAGGCCTCTTTCGACATCACCGCGGATCCTGCAACT TTCATTCAGGGTGGAGTGAAGCAACTACTCGAAAACACAAAGGAGGATTTCTTCTTGAAAATCAAAGGCTTGTTGAAGGAATGTGCAGACTCGTGCTACG AAAGGATTCAGAAGATTCCTTATGTCACCTGTCCAGTCAAACCAGAGGGTTCCATGTTTGTCATGGTGAAGCTGAACTTGGAAATGCTGGAAGACATCGA AGACGACGTGGACTTCTGTAACAAGCTTGCTAGTGAGGAATCTGTAATAGTCCTACCAGGGTTAGGTGTAGGTCTGAAGAACTGGCTGCGTATAACTTTC GCAATCGATCAAACTGCTCTTGAAGACGGGCTCAACAGGATGACCACGTTCTGCGAAAGGCATGCGAATAAGCCTTGA
AA sequence Show only first row Show all	>Lus10017705 pacid=23155581 polypeptide=Lus10017705 locus=Lus10017705.g ID=Lus10017705.BGIv1.0 annot-version=v1.0 MGEEGINGMDENWKFKPNTELISASKVTVRGFLTSLMSKVNKDDADKRSVVPLSHGDPSAFACFRTNPAAEDAMANSLRSAKFNGYSPPAGVPAARRAIA DHLSRDLPYKLSEDDVYLAVGCIQAIEVTLAVLARPGAIILLPRPGFPHYESRCAASNLEARHFDLLPEKGWEVDLQGVEALADENTVAMVVINPGNPCG SVYSYEHLKRVAETAKKLGILVIADEVYAHLTFGSNEFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWVVTTDPKGILTKTGMVESIKASFDITADPAT FIQGGVKQLLENTKEDFFLKIKGLLKECADSCYERIQKIPYVTCPVKPEGSMFVMVKLNLEMLEDIEDDVDFCNKLASEESVIVLPGLGVGLKNWLRITF AIDQTALEDGLNRMTTFCERHANKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017705 [exp]	0	1
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	1.4	0.9467
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	8.8	0.9306
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	10.0	0.9262
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	13.0	0.9338
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10014165 [exp]	14.5	0.9087
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	18.3	0.9130
AT4G23895			Pleckstrin homology (PH) domai...		Lus10032387 [exp]	18.9	0.9149
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032414 [exp]	20.8	0.9147
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	23.8	0.9286
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	26.1	0.9214

Compare expression of checked genes

Lus10017705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.