Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06130 500 / 5e-180 GLX2-4 glyoxalase 2-4 (.1.2) AT2G31350 497 / 7e-179 GLX2-5 glyoxalase 2-5 (.1.2) AT2G43430 496 / 2e-178 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT3G10850 202 / 1e-63 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G53580 67 / 1e-12 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) AT1G25375 49 / 2e-06 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033662 [exp] 588 / 0 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10039860 [exp] 562 / 0 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10018625 [exp] 488 / 1e-175 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10029086 [exp] 204 / 2e-64 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10034259 [exp] 204 / 2e-64 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 191 / 2e-59 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10020760 [exp] 69 / 4e-13 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 54 / 4e-08 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026500 [exp] 553 / 0 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 530 / 0 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.019G062600 [exp] 199 / 1e-62 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.001G380100 [exp] 73 / 1e-14 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.005G204800 [exp] 68 / 8e-13 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.010G122000 [exp] 45 / 4e-05 AT1G25375 572 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.010G122100 [exp] 45 / 4e-05 AT1G25375 600 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017706 pacid=23155530 polypeptide=Lus10017706 locus=Lus10017706.g ID=Lus10017706.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCCTCTCTTGCACTAGGGCAAGGAGCGCGCTCTGTGTATGGCCAGGTGCGAGGCAGCTTTGCCTTCGGAAGAGCCTCTTGTGTGGATTCA TGTGGTTGTTGTCTACCCCGTTTAAGACGTTACGTTACGCTAATCGGACGCTTAGAGTATCTCAGTTCTGCAGCATAACGAACATGCCGTCCTCGTTGCA AATTGAATTGGTTCCATGTCTGAGCGACAACTATGCGTATTTGATACATGATGCTGACACCGGCACTGTAGGAGTGGTGGATCCGTCTGAAGCTGCACCG ATTATAGATGCTCTAAATAGGAAGAACCGAAACTTGACCTATATCTTGAATACCCATCACCATTATGACCATACCGGAGGAAATGAAGAGCTGAAAGCAA GGTACGGTGCAAAGGTAATTGGTTCGGGACTTGACAGAGAAAGGATTCCAGGCATTGACATATCGCTAAATGATGGCGACAAGTGGATGTTCGGAGGCCA TGAAGTTCGTGTCATGGAAACTCCTGGCCACACCCGAGGTCACATTAGTTTCTACTTCCCTGGATCATCCTCAATTTTCACAGGAGACACATTATTCAGC TTGTCGTGTGGCAAACTCTTTGAAGGAAAGCCTGAAGAGATGCACGCCTCCCTTCAAAAAATCGTATCTTTACCAGACGATACGAAGATCTTCTGCGGCC ATGAATACACTTTGAGTAATTCCAAGTTTGCATTGTCGGTCGACCCAAACAACGAGTCGCTCGAGTCTTATGCAGCAGAAGTAGCGCATCTTCGTAGCAA GAGCTTACCAACAATTCCGACCACTGTGAAGGTGGAGAAGGCTTGCAACCCATTCCTCCGCACTTCGAGTACAGAGATCCGGCAGTCGTTAAAGATCCCG GAAGCGACCAGCGACGCAGAAGCTTTGGGAGTCATCCGTCGAGCCAAAGATAACTTCTGA
AA sequence Show only first row Show all	>Lus10017706 pacid=23155530 polypeptide=Lus10017706 locus=Lus10017706.g ID=Lus10017706.BGIv1.0 annot-version=v1.0 MAASLSCTRARSALCVWPGARQLCLRKSLLCGFMWLLSTPFKTLRYANRTLRVSQFCSITNMPSSLQIELVPCLSDNYAYLIHDADTGTVGVVDPSEAAP IIDALNRKNRNLTYILNTHHHYDHTGGNEELKARYGAKVIGSGLDRERIPGIDISLNDGDKWMFGGHEVRVMETPGHTRGHISFYFPGSSSIFTGDTLFS LSCGKLFEGKPEEMHASLQKIVSLPDDTKIFCGHEYTLSNSKFALSVDPNNESLESYAAEVAHLRSKSLPTIPTTVKVEKACNPFLRTSSTEIRQSLKIP EATSDAEALGVIRRAKDNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10017706 [exp]	0	1
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	1.0	0.7849
AT5G53140			Protein phosphatase 2C family ...		Lus10014926 [exp]	11.2	0.6762
AT3G09010			Protein kinase superfamily pro...		Lus10004825 [exp]	12.2	0.7019
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	16.4	0.7166
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	22.0	0.7045
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	24.2	0.7032
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	24.5	0.6834
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	26.6	0.7026
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	27.8	0.6854
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	32.3	0.6989

Compare expression of checked genes

Lus10017706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.