Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37360 418 / 3e-136 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT2G39350 416 / 8e-136 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55130 409 / 2e-133 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55100 402 / 2e-131 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55110 400 / 8e-130 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT5G13580 399 / 3e-129 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G53510 396 / 5e-128 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT2G13610 285 / 2e-86 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55090 282 / 1e-84 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G21090 218 / 2e-61 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033663 [exp] 1101 / 0 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 462 / 3e-152 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 459 / 3e-151 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 392 / 2e-126 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10004274 [exp] 308 / 1e-94 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 307 / 4e-94 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 283 / 9e-85 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 274 / 2e-82 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 257 / 3e-76 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045100 [exp] 454 / 1e-149 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 449 / 2e-147 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 428 / 4e-140 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 418 / 3e-136 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 406 / 9e-132 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 397 / 6e-129 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 397 / 3e-128 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.007G004800 [exp] 322 / 5e-100 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 308 / 1e-95 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 302 / 1e-93 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10017707 pacid=23155566 polypeptide=Lus10017707 locus=Lus10017707.g ID=Lus10017707.BGIv1.0 annot-version=v1.0 ATGGCAAGCCTCGAGAGCTTGCTGGACATGGACGAAACTATCCGAACGACCACAACGGATAACAACGAAGAAAGTGGGCTGGTGTTCAAGAACCTAACCT ACAGTGTGAAGAAGAAAGAGGCGTACCTACTCCATGATATCTCTGGACATGCTGTCATGGGTGAGATCACGGCTATTATTGGGCCTAGTGGTGCTGGAAA ATCAACCTTACTTGATGCCCTGGCTGGCCGGATTGCTCGGGGGAGTCTCGAGGGGTCTGTTAAAATGGACGGCAAGGTGGTGACTACCAGCTATATGAAG AAGATATCTTCTTACGTGATGCAAGACCATAATCTCTTCCCCAAGCTGACAGTTTTCGAGACGTTCTTGTTCGCTGCAGAGTTCAGACTTCCTCCGACCA TTTCCAGAGCCGAGAAGATGGACAGAGCTCATGAACTCATCCACCAGCTAGGCCTCACGAACGTCACACATTCATACATTGGCGACAGAGCCGGGAAAGG AGTCTCAGGAGGAGAACGACGAAGGGTTTCGATCGGAATCGACATCATCCATAACCCGCCATTGCTGTTCCTCGACGAGCCCACCTCAGGATTGGACTCT GCAAACGCTTACAGTGTGGTGGAAAAGGTTAAAGACATTGCTCGAGGTGGGAGCATAGTGTTGATGACCATTCATCAACCTTCTTACAGAATCCAACTGC TCCTGGATCGCATTGCCATCCTCGCCAGGGGTAGGCTGATATACATGGATACCCTAGCTGAACTTCCAAAGCATCTATCTGAATTCGGCAGACCGATTCC AGATACTGAAAACAGCATCGATTATCTCCTTGATGTCATCAAAGAATACGACGAATCCACTTCAGGATTGGATCCTCTAGTGATGTACCAAAGAGATGGA ATCATACCTGATCCAATTTCCATCACTCCTCACTCCATTGATCATGATCACCAATTCGACCAATTCGACAATTCGGATCAACCTCGCTTAGCTTCCCATT TCTACAAGGATTTCCCTGTTTGGCTGTACCACGGATTCACTAGAACACCTCGTCGAACACCTTCCTGGACTCCTCCTGCAATCGAAGAAGAACAACCACC ATCCGAGCCTGCAGATCAGGTTTCGAAATTCGCCAACCCATGGATCCGAGAACTTAGCATAATAAGCTGGAGAACGGTGCTGAACATCATCCGTACACCG GAGCTCTTCCTATCCCGAGTAATAATCCTCATCGTCATAGCCCTAATCCTCTCCTCCATCTACAGAGACCTCGGCGATCCATCTTTCAAGAGAGTGAACC ACCTTCTCAACTTCTACATCTTCACCGTCAGCCTCGTCTTCTTCTCATCGAACGACGCCGTCCCGATCTTCATCCAAGAGCGATCGATCTACATCCGAGA AACCTCCCACAACGCCTACCGATCATCAACCTACGCCGTCGCTTCTCTAATCGTCTACCTCCCGTTCTTCGCCGTCCAATCCTTCACATTCGCATCCCTA ACAAAATCAATCCTAAACCTAAACGGCGGCCTCTTCAACTTCACATTGATCCTCTTTGGCTCGTTAATCACCTCCCATTCCTACGTCACGCTAGTCTCCG CGGTGGTCCCGAGCTACGTCGCGGGGTACGCCGTCGTCATCGCCACGACGGCGGTATTCTTCCTCACCTGCGGGTTTTTCCTGAAGAAGAGTGAGATACC GGTGTGGTGGCAGTGGCTGCACTACGCGTCGGCTATCAAATACCCGTTCGAGGGGATGCTGAAGAACGAGTTCGGAGGCGGGAGGTGCTACTACGGGAGG TTTTCCGATCTGTCGGCGGGGCCTTTGGGAGAGGTGAAGGTGAGTGAAATGCACGCTAGATTGATTGCGGATGGGACGGCGCCGGAAGGGAAGTGTCCGT TGATCGGAGAAGACGTGATATCGTCGATGGACGTTGGGGGTGGGGATTTGTGTCTCGACGTAACCGTTTTGCTGGGTTTGGGTTTGGTTTACCGCGTTTT CTTGTATTTGGTGCTCCGGTTTTACACTAATAATGTTAGGAAATGA
AA sequence Show only first row Show all	>Lus10017707 pacid=23155566 polypeptide=Lus10017707 locus=Lus10017707.g ID=Lus10017707.BGIv1.0 annot-version=v1.0 MASLESLLDMDETIRTTTTDNNEESGLVFKNLTYSVKKKEAYLLHDISGHAVMGEITAIIGPSGAGKSTLLDALAGRIARGSLEGSVKMDGKVVTTSYMK KISSYVMQDHNLFPKLTVFETFLFAAEFRLPPTISRAEKMDRAHELIHQLGLTNVTHSYIGDRAGKGVSGGERRRVSIGIDIIHNPPLLFLDEPTSGLDS ANAYSVVEKVKDIARGGSIVLMTIHQPSYRIQLLLDRIAILARGRLIYMDTLAELPKHLSEFGRPIPDTENSIDYLLDVIKEYDESTSGLDPLVMYQRDG IIPDPISITPHSIDHDHQFDQFDNSDQPRLASHFYKDFPVWLYHGFTRTPRRTPSWTPPAIEEEQPPSEPADQVSKFANPWIRELSIISWRTVLNIIRTP ELFLSRVIILIVIALILSSIYRDLGDPSFKRVNHLLNFYIFTVSLVFFSSNDAVPIFIQERSIYIRETSHNAYRSSTYAVASLIVYLPFFAVQSFTFASL TKSILNLNGGLFNFTLILFGSLITSHSYVTLVSAVVPSYVAGYAVVIATTAVFFLTCGFFLKKSEIPVWWQWLHYASAIKYPFEGMLKNEFGGGRCYYGR FSDLSAGPLGEVKVSEMHARLIADGTAPEGKCPLIGEDVISSMDVGGGDLCLDVTVLLGLGLVYRVFLYLVLRFYTNNVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10017707 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	9.8	0.7771
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	9.8	0.7907
AT2G26390			Serine protease inhibitor (SER...		Lus10005087 [exp]	13.3	0.7647
					Lus10028090 [exp]	14.8	0.7627
AT1G11070			unknown protein		Lus10038307 [exp]	20.0	0.7586
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	35.7	0.7403
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	36.6	0.7484
AT4G02210			unknown protein		Lus10027531 [exp]	37.5	0.7147
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	39.1	0.7407
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	40.0	0.6901

Compare expression of checked genes

Lus10017707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.