Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03790 241 / 2e-77 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 226 / 1e-71 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G29190 201 / 2e-62 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 199 / 6e-62 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 199 / 2e-61 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT2G41900 184 / 5e-53 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 181 / 4e-52 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 178 / 3e-51 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G07500 164 / 1e-49 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G55980 164 / 2e-46 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033665 [exp] 355 / 3e-123 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 259 / 4e-85 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10035006 [exp] 201 / 3e-62 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 198 / 6e-61 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10019709 [exp] 181 / 2e-51 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 171 / 1e-48 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 169 / 1e-47 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 162 / 5e-47 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138300 [exp] 264 / 1e-86 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.017G013400 [exp] 256 / 2e-83 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G234300 [exp] 206 / 7e-64 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G058600 [exp] 198 / 6e-61 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.001G266700 [exp] 181 / 4e-52 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 181 / 8e-52 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 180 / 1e-51 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 180 / 2e-51 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G252600 [exp] 176 / 6e-50 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 175 / 1e-49 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10017708 pacid=23155451 polypeptide=Lus10017708 locus=Lus10017708.g ID=Lus10017708.BGIv1.0 annot-version=v1.0 ATGACCACCCCGGCCGCCTCCATCTACTCCGATCACCACCCATCCTCCCCCACCGCCAAACTCCCTCCCAGAAAGCTCCTGGTCAACAGAAACAACACCA CCGTTGACTTCCCCCAGCTGGACGACATGTCGTCTTTGGCGCATTTCTACAAACACCTTCCGTGCAACAAATCCGACCTTCTCGACGAAGAAGAAGAAGA CGAAGATCCTTACTCATCCGATCAATTCCGGATGTACGATTTCAAAGTCAGGAGGTGTACAAGGAGCCGTAGCCACGACTGGACTGACTGCCCCTTTGCC CACCCTGGCGAAAAGGCGCGCCGCCGTGACCCGAGGAAGTTCCACTACACGGGCGCGGTTTGCCCTGAGTTCCGACGCGGTGGCGGGTGTAGCCGCGGCG ATAACTGCGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCTTCAAGGTATAGAACTGAGGCTTGTAAAGATGGGAAGGGGTGTAAGAGGAAGGT CTGCTTCTTCGCTCACTCCCCTCGCCAGCTCCGCCTCCTTCCGCCGGAGAAGTCGTCACCGACGAGCAGGACCGGTGGTGGAAAGATTAACCACCGCCAT CAGTCCTGCGGATGCTTGGTCTGCCGCGGCGGCGGCGATTCCTCATCTCCGACGTCAACTCTCATCGGACTGTCCCATCTCTCGCCGCCGCTGTCCCCTT CTTTCTCCTCATCACCGCCTGTCTCGCCGGTGAGCCACCACCGTCCGAGCGGGTTTTCTCACCGGCTGAGCAAGTTCCAGTCGCGGTACACTAGCTACAA AGACGTCCTGTCCGAGCTGATGTCTTCAACGCCCCCCCCGCTGCTGGGGCGGCGGCGGCTGCGGCGGTGTCGTCATCGTCTCCGACTTCAGGCCTGA
AA sequence Show only first row Show all	>Lus10017708 pacid=23155451 polypeptide=Lus10017708 locus=Lus10017708.g ID=Lus10017708.BGIv1.0 annot-version=v1.0 MTTPAASIYSDHHPSSPTAKLPPRKLLVNRNNTTVDFPQLDDMSSLAHFYKHLPCNKSDLLDEEEEDEDPYSSDQFRMYDFKVRRCTRSRSHDWTDCPFA HPGEKARRRDPRKFHYTGAVCPEFRRGGGCSRGDNCEFAHGVFECWLHPSRYRTEACKDGKGCKRKVCFFAHSPRQLRLLPPEKSSPTSRTGGGKINHRH QSCGCLVCRGGGDSSSPTSTLIGLSHLSPPLSPSFSSSPPVSPVSHHRPSGFSHRLSKFQSRYTSYKDVLSELMSSTPPPLLGRRRLRRCRHRLRLQA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	0	1
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10012670 [exp]	2.4	0.9403
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	6.2	0.9357
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	11.8	0.9166
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	12.1	0.9042
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	14.2	0.9406
AT1G11120			unknown protein		Lus10011221 [exp]	15.8	0.8458
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	21.4	0.9348
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007560 [exp]	29.0	0.9264
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10025085 [exp]	33.0	0.8861
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	34.6	0.8496

Compare expression of checked genes

Lus10017708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.