Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17465 394 / 4e-138 RPL3P ribosomal protein L3 plastid (.1) AT2G43030 118 / 3e-31 Ribosomal protein L3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033666 [exp] 522 / 0 AT3G17465 455 / 2e-162 ribosomal protein L3 plastid (.1) Lus10001337 [exp] 121 / 4e-32 AT2G43030 365 / 2e-128 Ribosomal protein L3 family protein (.1) Lus10013640 [exp] 121 / 5e-32 AT2G43030 365 / 6e-128 Ribosomal protein L3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207000 [exp] 421 / 4e-149 AT3G17465 478 / 1e-171 ribosomal protein L3 plastid (.1) Potri.010G002300 [exp] 419 / 2e-148 AT3G17465 484 / 8e-174 ribosomal protein L3 plastid (.1) Potri.013G070100 [exp] 134 / 2e-37 AT2G43030 369 / 7e-130 Ribosomal protein L3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF00297 [flax] [poplar] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Lus10017709 pacid=23155503 polypeptide=Lus10017709 locus=Lus10017709.g ID=Lus10017709.BGIv1.0 annot-version=v1.0 ATGTCCACCGCCGGTATCCGCCGCCTTCTATCTCTTTCCACCAGAACATCCTCCTCCGCCGAATCCCATCACCCATTTCACCAATATCTCCGAAGCTTCA CCGCCACCGCCGATGCCCTGCTTCATCCGCAGCAGAGCCCTCTGATTCCCAATCGGATCATCGAGCCCAAGCCAGGCGTCATGGCTCCTTCCTCTAGGCG GACGGGACTTATCGCTGTCAAGTGTGGAATGACTGGCCTCTGGGACAAATGGGGAGCTAGGATTCCTATCACCGTGCTTTGGGTCGACGACAACATCGTC TCCCAGGTCAAAACCGTTGAGAAGGAAGGCATTTTCGCCTTGCAGATTGGTTGCGGGCAGAAGAAGGCGAAGCATTTGACGAAGCCAGAAGTGGGGCATT TCAGAGCTCAGGGTGTTCCTCTGAAGAGGAAGTTGAGGGAATTCCCTGTCACTGAAGATGCATTACTGCCGCTTGGCACTTCGCTTGGTGTTCGTCATTT CGTTCCTGGTCAATTTGTTGATGTCACTGGAATCACCATGGGCAAAGGGTTTCAGGGTGGGATGAAAAGACATAACTTTAAAGGAATGCCAGCGAGCCAT GGACATTCTTTATCACACCGAAGTATCGGTTCCACTGGCCAGAGGGATGCTCCTGGTAAGGTTTTTAAAGGAAAGAAAATGCCTGGGCGGATGGGTGGCA AGCAACGAACGGTGAAGAACGTGTGGATATATAAGATCGACCACGTGAGGAACTTGATATGGGTGAAAGGCCAAGTACCGGGAGCAGAAGGAAATTTCGT CTTTCTGAAAGACGCAGTTTACAAGAAACCGGAGATTTCGATGCTTCCTTTCCCAACGTACTTCCCGGAAGAAGGTGAGGAGGAACCGTCGGAACCTCTG GTTGCTGACCTTGGAGAAGTAGACCCGTTTATGTTGGGAGATTGA
AA sequence Show only first row Show all	>Lus10017709 pacid=23155503 polypeptide=Lus10017709 locus=Lus10017709.g ID=Lus10017709.BGIv1.0 annot-version=v1.0 MSTAGIRRLLSLSTRTSSSAESHHPFHQYLRSFTATADALLHPQQSPLIPNRIIEPKPGVMAPSSRRTGLIAVKCGMTGLWDKWGARIPITVLWVDDNIV SQVKTVEKEGIFALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPLGTSLGVRHFVPGQFVDVTGITMGKGFQGGMKRHNFKGMPASH GHSLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGKQRTVKNVWIYKIDHVRNLIWVKGQVPGAEGNFVFLKDAVYKKPEISMLPFPTYFPEEGEEEPSEPL VADLGEVDPFMLGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	0	1
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	2.8	0.9661
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	3.5	0.9681
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	3.6	0.9577
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	4.6	0.9651
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	5.3	0.9639
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	8.2	0.9505
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	8.4	0.9624
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	8.8	0.9614
AT1G63980			D111/G-patch domain-containing...		Lus10024674 [exp]	9.8	0.9264
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	10.0	0.9604

Compare expression of checked genes

Lus10017709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.