Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03760 195 / 3e-58 Prefoldin chaperone subunit family protein (.1) AT3G50120 57 / 2e-08 Plant protein of unknown function (DUF247) (.1) AT3G50140 54 / 1e-07 Plant protein of unknown function (DUF247) (.1) AT3G50190 54 / 1e-07 Plant protein of unknown function (DUF247) (.1) AT3G50170 54 / 1e-07 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50180 53 / 3e-07 Plant protein of unknown function (DUF247) (.1) AT3G50130 52 / 5e-07 Plant protein of unknown function (DUF247) (.1) AT3G50160 51 / 9e-07 Plant protein of unknown function (DUF247) (.1) AT2G36430 49 / 3e-06 Plant protein of unknown function (DUF247) (.1) AT5G22540 48 / 1e-05 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033671 [exp] 387 / 3e-134 AT1G03760 197 / 1e-60 Prefoldin chaperone subunit family protein (.1) Lus10009871 [exp] 152 / 2e-41 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10033670 [exp] 76 / 2e-16 ND / Lus10039369 [exp] 56 / 2e-09 AT3G50150 78 / 8e-18 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 54 / 2e-07 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 53 / 3e-07 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 52 / 5e-07 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 52 / 8e-07 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10016900 [exp] 46 / 4e-05 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012500 [exp] 273 / 7e-88 AT1G03760 205 / 4e-62 Prefoldin chaperone subunit family protein (.1) Potri.003G181800 [exp] 61 / 7e-10 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 59 / 2e-09 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 54 / 9e-08 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 54 / 1e-07 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 53 / 2e-07 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 51 / 1e-06 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 46 / 4e-05 AT4G31980 232 / 3e-69 unknown protein Potri.007G013800 [exp] 45 / 0.0001 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.003G206601 [exp] 44 / 0.0002 AT4G31980 301 / 3e-95 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10017711 pacid=23155471 polypeptide=Lus10017711 locus=Lus10017711.g ID=Lus10017711.BGIv1.0 annot-version=v1.0 ATGGGGTCAGCTAAGGGGGAAGTAACCCCATTCGCGTCACTTTTCCCTGTGGAGGATACCCACAAGGCAGTGAAGCGCGTGGAGGAAAGCATCGCGGAGA AGCATAAGGAGATTGAGCGTATCAAGGAATTCATCGCTGATAACAACAGTGTTATCAACCTTGTCTCCAAACTCCCCGAGGAGCTTCACCATGACATTAT GGCAAGTGTTCCGTTTGGGAAAGCAGCCTTCTTTCCTGGTCGGCTTCTACACACCAATGAGTTTGTGGTGCTACTTGGAGAAGGATACTATGCAGAAAGA ACGTCGAAGCAAACTGTTGAAATTTTGAAAAGGAGGGGGAAGGCTTTGGATTCTCAAGTTGAATCTCTTAAGGCCAATGTTAAGGATCTGAAAGCTGAAG CATCCTTCTTTGACGCCACGGCTTCTGAGGCAGCTGAGGGTATTGTGGAGATAAGGGAAGACTATGTGGAGGAAGATCCTGTTGAAGAACATTTGAAAGC ATCTTCCAAAGGGAAAGAAAAGAATCCCAGGCCAGATGAGAGCAAAGGTACGGTTGAAGATGAGGAATATGCTCGTATGATGGCTAGGTTGGATGAGCTT GAGAAAGAAGAAGAACTTGAAGATGAAGATAAAGATGAAGATGACGAGCCAATGGCTAATGCTGCAAGTAAGGATGAGAATGAAACAGAAGAAGAAGAAG AAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGTAGAAGAAGAAAGCAGCACGAGCACTGCACAAAATCAGACTCATTTACA GTGTACAGGCTTAACAGTTCAGCCACTACCCAAAGGGACTATCATAGAACACAACGACAACAGACAAACAAACCCACAGGCTGTGCCCTCGAGATCGGAT TTTGACAGCTCCAAGGCTTTTCCTGGCTCTATTGTAGAACGCTCCACCGCAGTTTTTAACACAACAAATTCTGCAACTTCACAGAGACACTATCTAAGAC TGCTACTTCAAAGAAGAAATGAAGAGTACTATAGCGAAGTGAAGAGATACGCCTCGGCGATGAAAGCATTGGAAGAAATGACTCGTAAATGTTATGCAGA TTCCATACCTCTCAACTCAGACGAATTCGTCGAAATGATGGTCCTCGTCGAGCTGATACGAAAGTGCTGTGCAATGACCGAATTTTCAGACGACGACGAC CCCATCTTCTTCGTCCCTTCGAATTTCAACGGGATAATGCGTGATGTCCTATTGCTGGAGAATTACTGTCGAAATTGTTCGAGCTGA
AA sequence Show only first row Show all	>Lus10017711 pacid=23155471 polypeptide=Lus10017711 locus=Lus10017711.g ID=Lus10017711.BGIv1.0 annot-version=v1.0 MGSAKGEVTPFASLFPVEDTHKAVKRVEESIAEKHKEIERIKEFIADNNSVINLVSKLPEELHHDIMASVPFGKAAFFPGRLLHTNEFVVLLGEGYYAER TSKQTVEILKRRGKALDSQVESLKANVKDLKAEASFFDATASEAAEGIVEIREDYVEEDPVEEHLKASSKGKEKNPRPDESKGTVEDEEYARMMARLDEL EKEEELEDEDKDEDDEPMANAASKDENETEEEEEEEEEEEEEEEEEEEEEVEEESSTSTAQNQTHLQCTGLTVQPLPKGTIIEHNDNRQTNPQAVPSRSD FDSSKAFPGSIVERSTAVFNTTNSATSQRHYLRLLLQRRNEEYYSEVKRYASAMKALEEMTRKCYADSIPLNSDEFVEMMVLVELIRKCCAMTEFSDDDD PIFFVPSNFNGIMRDVLLLENYCRNCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03760			Prefoldin chaperone subunit fa...		Lus10017711 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	2.2	0.7966
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	5.7	0.7337
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10008862 [exp]	14.4	0.6568
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	14.8	0.7029
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	18.8	0.6957
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	23.5	0.6797
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	27.4	0.6503
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10013398 [exp]	30.5	0.6615
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	31.3	0.6480
AT4G33740			unknown protein		Lus10012453 [exp]	31.4	0.6814

Compare expression of checked genes

Lus10017711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.