Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03750 245 / 6e-77 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT2G18760 150 / 3e-42 CHR8 chromatin remodeling 8 (.1) AT3G12810 125 / 1e-33 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G13370 119 / 1e-31 CHR5 chromatin remodeling 5 (.1) AT3G19210 119 / 1e-31 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT1G08600 117 / 9e-31 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT5G63950 116 / 2e-30 CHR24 chromatin remodeling 24 (.1) AT3G06010 115 / 3e-30 ATCHR12 Homeotic gene regulator (.1) AT3G06400 114 / 1e-29 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G19310 112 / 3e-29 Homeotic gene regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033669 [exp] 261 / 1e-82 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10033909 [exp] 151 / 1e-42 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003543 [exp] 149 / 4e-42 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10015690 [exp] 117 / 6e-31 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10002974 [exp] 117 / 9e-31 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10037696 [exp] 115 / 3e-30 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10014047 [exp] 115 / 4e-30 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 115 / 5e-30 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10012813 [exp] 114 / 1e-29 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012400 [exp] 254 / 4e-80 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.005G226500 [exp] 149 / 5e-42 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 128 / 1e-34 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.001G207700 [exp] 122 / 2e-32 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 121 / 2e-32 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.005G066600 [exp] 121 / 3e-32 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.004G141500 [exp] 120 / 7e-32 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.001G253400 [exp] 117 / 4e-31 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.008G149900 [exp] 116 / 1e-30 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.013G048500 [exp] 115 / 3e-30 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017712 pacid=23155561 polypeptide=Lus10017712 locus=Lus10017712.g ID=Lus10017712.BGIv1.0 annot-version=v1.0 ATGCTGGACATACTGGAAAAGTTTCTCATACGCAAAGGCTACAGTTTTGCAAGACTCGATGGCTCCACCCCAACCAACTTGCGCCAAGCTCTGGTTGATG ATTTTAACTCGAGTCCGAGCAAACAGGTGTTTCTTATATCGACCCGTGCCGGTGGGCTTGGTCTGAATCTTGTGAGCGCAAACCGTGTGGTGATATTTGA TCCAAACTGGAATCCTGCGCAAGACTTGCAAGCCCAAGACAGATCGTTCCGGTTTGGGCAGAAGCGCCATGTTGTAGTTTTTCGTCTGCTCGCGGCAGGT TCGTTCGAGGAGATTATCTATTCCCGCCAGGTGTACAAGCAGCAGCTCTCGAACATTGCCGTCTCCGGCAAAATGGAGAAGGCGTTATTTCGAAGGCGTT CACGTTTTTCTTCATTGCTCGTTTTGAGATTGTTATTACCTTCGGTTCGAAGCAATCTCGACTTCTTACCAACTTCGCACTCTTTTTTTTCAGGATTGTA A
AA sequence Show only first row Show all	>Lus10017712 pacid=23155561 polypeptide=Lus10017712 locus=Lus10017712.g ID=Lus10017712.BGIv1.0 annot-version=v1.0 MLDILEKFLIRKGYSFARLDGSTPTNLRQALVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAG SFEEIIYSRQVYKQQLSNIAVSGKMEKALFRRRSRFSSLLVLRLLLPSVRSNLDFLPTSHSFFSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10017712 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033842 [exp]	1.4	0.8659
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	3.3	0.8677
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10034342 [exp]	6.9	0.8338
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	7.0	0.8325
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	7.1	0.8248
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	9.6	0.8534
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	17.5	0.8411
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	18.4	0.8274
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10033024 [exp]	19.0	0.7782
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10001184 [exp]	19.4	0.7957

Compare expression of checked genes

Lus10017712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.