Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28380 183 / 4e-56 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 129 / 5e-35 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 127 / 8e-34 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 123 / 7e-33 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 122 / 4e-32 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G33970 119 / 5e-31 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 119 / 1e-30 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 118 / 1e-30 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 118 / 2e-30 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 115 / 4e-30 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033672 [exp] 281 / 4e-94 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 139 / 1e-37 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 137 / 6e-37 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 132 / 1e-35 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 128 / 6e-34 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 125 / 9e-34 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 124 / 4e-33 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 121 / 2e-32 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 120 / 4e-31 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139200 [exp] 208 / 1e-65 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 136 / 9e-37 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 134 / 3e-36 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 130 / 6e-36 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 132 / 1e-35 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 128 / 3e-34 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 126 / 2e-33 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 126 / 3e-33 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 126 / 4e-33 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 122 / 2e-32 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017713 pacid=23155488 polypeptide=Lus10017713 locus=Lus10017713.g ID=Lus10017713.BGIv1.0 annot-version=v1.0 ATGGGTTGTCCCCATCCTCCTCTTCCTCCTATCCTACCCAGTATTGAAAATCGAATTGGTGAGATTTACAGTTCAAAAGATCGGTACAACGAGTTTGAAG GAGCATTGCCTCCCCAGCTCTTCCAGACGGGGCTCGACGCGATTTTTGTCAACAACAACCGCTTCACAATCTCCAGTGCTCTCAACGGAACAGCCGGGAC ATCAGTCTTGGTCATTGCCAACAACAAGTTCGATGGTTGCTTGCCTCACACGATATCCAACTTGGCAGAGTCTCTCGAGGAGCTAGTGCTCGTAAACTCG AGCTTGTCCGGATGCTTGCCTCCGGAGGTAGGCTATCTATACAAGCTGAAGCTCCTTGATGTCAGCAACAACAAGCTGGTTGGTCCATTGCCATATAGCC TAGCCGGGTTGGCTCATTTGGAGGTGCTGAATTTGGAGCATAACTTGATGACTGGGATTGTCCCTGAAGAAGTGTTCGACGATCGGAGAAACTGTCTTCC TGATAAGCCACTTCAGAGGAGCAAGGAGCTTTGTAGCATCGTTGCGGAGCATCCTGTGGACTGCTTCCAACGATGTGGCGAGGTAGGGGGTGACATGTTT GGTGGCATCAATAGTGGTGGTCTACTTGTTCCTGCAGCTGCTCCTGCTTTAACTCTTAGCCCTGTTTAA
AA sequence Show only first row Show all	>Lus10017713 pacid=23155488 polypeptide=Lus10017713 locus=Lus10017713.g ID=Lus10017713.BGIv1.0 annot-version=v1.0 MGCPHPPLPPILPSIENRIGEIYSSKDRYNEFEGALPPQLFQTGLDAIFVNNNRFTISSALNGTAGTSVLVIANNKFDGCLPHTISNLAESLEELVLVNS SLSGCLPPEVGYLYKLKLLDVSNNKLVGPLPYSLAGLAHLEVLNLEHNLMTGIVPEEVFDDRRNCLPDKPLQRSKELCSIVAEHPVDCFQRCGEVGGDMF GGINSGGLLVPAAAPALTLSPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10017713 [exp]	0	1
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	2.6	0.9406
AT1G54520			unknown protein		Lus10006109 [exp]	4.6	0.9185
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	4.9	0.9242
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	4.9	0.9353
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10036963 [exp]	6.1	0.8619
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	6.7	0.9220
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	6.9	0.9273
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	8.3	0.8833
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	9.4	0.9035
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	10.0	0.9071

Compare expression of checked genes

Lus10017713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.