Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20635 604 / 0 ATP binding;protein kinases;protein serine/threonine kinases (.1) AT2G33560 64 / 6e-11 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT5G18190 62 / 8e-10 Protein kinase family protein (.1) AT3G03940 61 / 2e-09 Protein kinase family protein (.1) AT3G13670 54 / 2e-07 Protein kinase family protein (.1) AT5G62310 53 / 5e-07 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G25760 51 / 2e-06 Protein kinase family protein (.1.2) AT1G45160 49 / 6e-06 Protein kinase superfamily protein (.1.2) AT1G49180 44 / 0.0002 protein kinase family protein (.1.2) AT1G13350 44 / 0.0003 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033673 [exp] 1036 / 0 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10040947 [exp] 81 / 8e-16 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10009836 [exp] 75 / 6e-14 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10013199 [exp] 72 / 2e-13 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 71 / 7e-13 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10014152 [exp] 63 / 4e-10 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 62 / 6e-10 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 60 / 4e-09 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10025827 [exp] 59 / 5e-09 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139000 [exp] 636 / 0 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Potri.010G185500 [exp] 86 / 2e-17 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.008G071900 [exp] 77 / 1e-14 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.005G258300 [exp] 74 / 4e-14 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 71 / 7e-13 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.019G034500 [exp] 66 / 5e-11 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 60 / 3e-09 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 59 / 5e-09 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 54 / 2e-07 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 53 / 5e-07 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [flax] [poplar] Mad3_BUB1_I Mad3/BUB1 homology region 1 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017714 pacid=23155511 polypeptide=Lus10017714 locus=Lus10017714.g ID=Lus10017714.BGIv1.0 annot-version=v1.0 ATGGCCACCATGTCAGCAGAATCCGGCAGCTCATTCTCCGATCGAGACCCTCTCCTCCAGTGGCTACTGTCGATAAGGAAGGCACTCGATGGCAAAGACT TCAGGCAACTTGAGGAGCTCGTTTCGAACTGTATCAGGACTTTCAAGGACGACCTAATGTATCGAGATGATCCCAGATTCCTCAAGATTTGGTTCCTCCA TTTGGAATGCAGTAGTGACTTTGAAACTGTTTTCAATGAGATGGAGAAGAGCAAGATATGCATGGAGAATTCTTTGCTTTACGAACTGTACGCGGGCTTC CTTGAAGCTAAGGAGATGTGGCTAGAAGCTCATATGGCTTATCAAATTGGCATCTTAAGGAAAGCTGAACCCCTTGAGAAATTGAAGAATGCGCAGTTCC TTTTCTTGGACAGAATGTCTGACAGAGTAAAGGCTTGCTCAGTGAAAAAGGTTGATGTTGGAGACTCCAGTCAGTCAGAAAACTGCATTAATCCTTGGTC TGCGTCCATCATAGAAAATTTGATGAAGAAGATACAACCCTCACTTGCAAAATATGATGGCTATCATCCAAGCAATAAAGCCTACTCTGGGAAGGTGGAC TTGTCTTCGCTTCGAAGTTCATCAAGGAATAAGATGGTCGAGCTAGGTAAAAGGAAGTACCAAATCAAGGGCTTTGCCGGTGAAGGTGCTTTTGCTCAAG TATTTAAAGCACATGATAGCAGTAACCCTGATGAAATCATTGCACTAAAGATACAAACTCCACCATTTCCTTGGCGGATCCCTGTCTGGCAAAGGCCATG TTATGGGTTTGCTCAACGGATGCATCTGTACTCAGATTACAGCATACTTGTTTGCGACTTCCTATCCCATGGGACACTTCACGATGTGATAAATTCCTAC GTGGTTATTGGCAAAACCATGGAGGAAGTATTATGTATTTATTACACAATAGAGATGTTATACATGCTGGAAACTTTGCATGATGTTGGACTTATTCATG GAGATTTCAAGCCTGACAACCTTGTTCTTCGCAGTACCAGAGATGAGCTAAAAGAAGATGAGTATACGCAACAAGATAGCCCATGGCGTGAACAGGGTCT ATGTCTAATAGACTGGGGAAGGGCGATAGATCTGCATCTTTTTCCAAGTAACATCGAGTTCGAAGGAACCTGCCTGACTTCTGGCTTTCGTTGTGTGGAG ATGCAGCAGAACAAACGCTGGAAATGCCAGGCAAGTGCTGACTCGTATAACCTCTGTGTCGTTGTACATACAATGCTACATGGATCCTACATGGAGATTG AAACGAAACACACTTCCGATGCAGGCGACATTTACATGCCTAGAACACCTTTCAAAAGGTATTGGAACTACAAATTATGGGAGAAGCTGTTCAAGAAGCT ACTGAACAATGCCCCTCATGACGACAAGATGTTACTCCGCAATTTGAGGGTGGAGTTTCAAGAATACCTTTGCACCGATCCCCAGTTATTAAGAAAGCTA AAGGAACTGCTGACAAAGCAGAGGCTCTCCTGGTGTTCTTCATAG
AA sequence Show only first row Show all	>Lus10017714 pacid=23155511 polypeptide=Lus10017714 locus=Lus10017714.g ID=Lus10017714.BGIv1.0 annot-version=v1.0 MATMSAESGSSFSDRDPLLQWLLSIRKALDGKDFRQLEELVSNCIRTFKDDLMYRDDPRFLKIWFLHLECSSDFETVFNEMEKSKICMENSLLYELYAGF LEAKEMWLEAHMAYQIGILRKAEPLEKLKNAQFLFLDRMSDRVKACSVKKVDVGDSSQSENCINPWSASIIENLMKKIQPSLAKYDGYHPSNKAYSGKVD LSSLRSSSRNKMVELGKRKYQIKGFAGEGAFAQVFKAHDSSNPDEIIALKIQTPPFPWRIPVWQRPCYGFAQRMHLYSDYSILVCDFLSHGTLHDVINSY VVIGKTMEEVLCIYYTIEMLYMLETLHDVGLIHGDFKPDNLVLRSTRDELKEDEYTQQDSPWREQGLCLIDWGRAIDLHLFPSNIEFEGTCLTSGFRCVE MQQNKRWKCQASADSYNLCVVVHTMLHGSYMEIETKHTSDAGDIYMPRTPFKRYWNYKLWEKLFKKLLNNAPHDDKMLLRNLRVEFQEYLCTDPQLLRKL KELLTKQRLSWCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	0	1
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	1.0	0.9849
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	2.0	0.9735
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	2.4	0.9834
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	3.0	0.9759
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	3.9	0.9732
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	5.3	0.9701
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	5.5	0.9720
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10018049 [exp]	5.6	0.9493
AT4G02800			unknown protein		Lus10022037 [exp]	7.3	0.9595
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	7.5	0.9699

Compare expression of checked genes

Lus10017714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.