Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03780 544 / 0 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G44270 87 / 2e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G22860 86 / 3e-17 Cell cycle regulated microtubule associated protein (.1.2) AT4G11990 74 / 1e-13 Cell cycle regulated microtubule associated protein (.1) AT5G15510 63 / 3e-10 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 62 / 8e-10 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G37478 50 / 8e-07 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033674 [exp] 1048 / 0 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10018608 [exp] 636 / 0 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 593 / 0 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10006677 [exp] 71 / 2e-12 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10030650 [exp] 63 / 6e-10 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10010706 [exp] 62 / 7e-10 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 62 / 1e-09 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10007382 [exp] 48 / 6e-06 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10020800 [exp] 48 / 7e-06 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138600 [exp] 666 / 0 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G013100 [exp] 645 / 0 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.003G117800 [exp] 94 / 7e-20 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 81 / 1e-15 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.017G092100 [exp] 61 / 2e-09 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G144061 [exp] 53 / 1e-07 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.004G118700 [exp] 54 / 3e-07 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain PF12214 [flax] [poplar] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Lus10017715 pacid=23155572 polypeptide=Lus10017715 locus=Lus10017715.g ID=Lus10017715.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCAACGATCGAGGAAGGAAGCACGGCCGTCGCGCCCACTTCGTCTTCAGTGGCGACTGTGATCGACGAGATGTACGAGTACTCCGCTCCCA GGTTCTTCGATTTCAACAGGGCGGAATCCGAGGAAGAAGCCCGCAAGGCAGAGCTCTGGTTCGACACCGCTCTCACATACGCCCCTTCGCCTTTCATGCC AAGAATTAAGGCCGGAAGATCATTCAAGGTAGAAAGCATGTGTGATTTCACTGAAGCAGACCAAAACCCTAAGGCTGCAGAATCATCCGATTCAATTGCT ACTGCCGTTTCTGGTTCCTCCAATTCTCAACCAGAGGACAGTCAGCCAGCTGATGCAAGAGAAGAAGAAGAAACAGCAAACAAGGAAAACAAAAGCTGCC TGGAGAAAATGTTGGATGCAAGAGATGTTCCTTGCAAAGGCACTGTGGAGAAGGCCATTCTCTTCTTTGAGCAGAAACATAAGACCATTCTTCAGAAGCA AGTAAAAGAGCAAATGAAAACCGAGGCCTGCTGCACACCTCAGCCACCAGTGAAGAACTCCCAGAAGGGAGGTGTGTTGACGGAGTCCAGGAAGCATCAA TCGGCCAAACACATTGCTAGTTTGATTAAGAATCCATCGGCGCTTAAATCGAAGACTCGAGCACAGACCTCCCATGGCGACAGGAGCTTGAAGACGGGAA ATCAAGACAGACCCCCTCATCCATTGCTTCACAAGTCCAAGCTCGGTCTTTCAACTAGCAATCCCAGTAATGGATCGTCTACAGCTAACAAAACACAGAA AGATGAGAGAAAGGTTTATGTCCGGGAGCCAGCAGCACGGATTAATTTCATGTCAACAGCAGAAATGATGCAGAAGTTTCAATCTGGAACCAGAGACTTG TCCTTGGTTATCCCACCTGGGAAAGCTAAGCTTACACTAACAAGACCCAAGGAGCCCGCCTTTGAAACTTCTCAGAGGGTTCGGGCAGTAAGAGTAAAGA GTTCTGCTGAGATCGAAGAAGAAATGCTGGCTAAACTTCCTAAGTTCAAAGCAAGACCACTGAACAAGAAGGAGTTCCATCTTGAGACAGCTGCAAGGGC CAATTTCAATGCAGAATCAGCATCAGTCGCCTCAACAGAAGTGTCTCGTCGGAATAATGAATGGAAGTCAAATCATCACACAGAACCGAAAACACCGCGA CTTCAGACCTCGTTGAGGGCTCGTCTAACGAAGGTGAAAAGTTCTCTTGAACTTGAGAAAGAGGCTCTTGAAAAGATGCCAAAGTTTAAGGCAAAGCCTT TAAACAAAAAGATATTTGAAAGCAAAGGAGAACTGGGAATCTTCTGCAACACCAAGAAGCAAGTCACCATACCTCAAGAATTCCACTTCGCCATTGATGA GCGAATTCCACCACCAACTGCTGTCGCTGATATGTTTGATAAGCTTTCTTTGACCTCCGAATCTCATGACAATCCGCTTCCTAGAAATACAGCACCTACC CCCTTCCATTTGCACACAGAGGATAGAGGAGCTGAAAAAGAAAGGAGGCTTGCCATGGAACTAACAAGGAAGCAAATGGAGGAAGAACTTGCTAGAGCTC GGAAGGCCAACCCATACCCATACACAACAGATTATCCAGTGGTTCCTCCAAAACCAGATCCCAAACCATGCACAAGACCAGAACCATTCCAGTTGGAGAG CCTTGTGCGGCACGAGCAAGAAATGCAGAAGGAAATGGAAGAGAGACAGAGGAAGGAGAAGGAAGAGGCACAGATGAGAGTATACAAAGCTCAGCCAATC CTTAAAGAGGATCCTATTCCACTACCAGAGAAAGTAAGGAGACCTCTTACCGAGGTTCAACAAGTCCAGCTCCACGTAGATCACCGTGCAACAAACAGGG CAGAGTTTGATCAGAAGGTGAAGGAAAAGGAAATGGTGTACAAACGATACAGAGAAGAAAGTGAAGCTGCAAAAATGGTAGAGGAAGAGAAGGCACTGAA GCAGATGAGAAGAACAATGGTTCCTCATGCCAGACCAGTCCCAAATTTCGAGAAACCCTTCTTCCCCCAGAAATCTTCGAAAGATGCCACGAGACCAAAG TCGCCAAGGCTACGAGTGCTTCGAAGGAGAGAAAGGCAAATCGGTGGTGCTTCTACTACCTCTGCTTCATGCATGCGGTGA
AA sequence Show only first row Show all	>Lus10017715 pacid=23155572 polypeptide=Lus10017715 locus=Lus10017715.g ID=Lus10017715.BGIv1.0 annot-version=v1.0 MAAATIEEGSTAVAPTSSSVATVIDEMYEYSAPRFFDFNRAESEEEARKAELWFDTALTYAPSPFMPRIKAGRSFKVESMCDFTEADQNPKAAESSDSIA TAVSGSSNSQPEDSQPADAREEEETANKENKSCLEKMLDARDVPCKGTVEKAILFFEQKHKTILQKQVKEQMKTEACCTPQPPVKNSQKGGVLTESRKHQ SAKHIASLIKNPSALKSKTRAQTSHGDRSLKTGNQDRPPHPLLHKSKLGLSTSNPSNGSSTANKTQKDERKVYVREPAARINFMSTAEMMQKFQSGTRDL SLVIPPGKAKLTLTRPKEPAFETSQRVRAVRVKSSAEIEEEMLAKLPKFKARPLNKKEFHLETAARANFNAESASVASTEVSRRNNEWKSNHHTEPKTPR LQTSLRARLTKVKSSLELEKEALEKMPKFKAKPLNKKIFESKGELGIFCNTKKQVTIPQEFHFAIDERIPPPTAVADMFDKLSLTSESHDNPLPRNTAPT PFHLHTEDRGAEKERRLAMELTRKQMEEELARARKANPYPYTTDYPVVPPKPDPKPCTRPEPFQLESLVRHEQEMQKEMEERQRKEKEEAQMRVYKAQPI LKEDPIPLPEKVRRPLTEVQQVQLHVDHRATNRAEFDQKVKEKEMVYKRYREESEAAKMVEEEKALKQMRRTMVPHARPVPNFEKPFFPQKSSKDATRPK SPRLRVLRRRERQIGGASTTSASCMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	1.0	0.9888
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	1.7	0.9849
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	2.0	0.9876
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	2.8	0.9749
AT3G52110			unknown protein		Lus10039611 [exp]	3.2	0.9741
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	3.3	0.9740
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	3.5	0.9841
AT4G17000			unknown protein		Lus10035651 [exp]	4.2	0.9746
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	4.5	0.9817
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	4.9	0.9778

Compare expression of checked genes

Lus10017715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.