Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55520 125 / 1e-36 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) AT3G13445 122 / 1e-35 TFIID-1, TBP1 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020260 [exp] 132 / 5e-39 AT1G55520 380 / 3e-136 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10002634 [exp] 129 / 9e-38 AT1G55520 382 / 7e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10031531 [exp] 122 / 2e-35 AT3G13445 333 / 4e-118 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) Lus10033675 [exp] 83 / 6e-21 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1) Lus10015150 [exp] 56 / 1e-10 AT1G55520 100 / 3e-28 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059300 [exp] 127 / 3e-37 AT1G55520 380 / 9e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Potri.019G033300 [exp] 125 / 1e-36 AT1G55520 376 / 4e-135 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0407 [flax] [poplar] TBP-like PF00352 [flax] [poplar] TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Representative CDS sequence Show only first row Show all	>Lus10017716 pacid=23155555 polypeptide=Lus10017716 locus=Lus10017716.g ID=Lus10017716.BGIv1.0 annot-version=v1.0 ATGGCGGAACAAGGAGCAGGACGATCATCGGACGGGAAACATCAGCCGTCTAGAATAACCGTTCCGACGACCAGAGAACAGAACGTTGTGTCGACGGTGA ACTTGTGTTGCGAGTTGGATCTGGTGCAGTTGGCTCTCCGATCACATAGCATGGTGTATGACCCTAGACGTTATTCTGCTTTTTCTCTGAGGCTCAGGAA CCCGGAAACAATGGCGATCATCTTCGCCTCCGGCAAGATGATCTGCGCGGGAGCTAAGAGCGAGGCAAATTCCAATTTGGCAGCCAGAGTGTTTGTTAGG ATCATCCAGAAGCTTGGATTTCCAGTTAGATTCGAGGATTTCACGATCCATGACAAGGACTTCGAGATCGAAAACGTGCTCGTTCGACGATCCAACCCGC TGACGGAGCTAAGTGGACGGAAGGAGGCTCGGCTGAACATCGTTGCTCGCAAATCGAAACGAAAACGAAAATCGAAGTTCAATTACATAAGCAGCGCCTT CTCCAATTTGAACTTGTGA
AA sequence Show only first row Show all	>Lus10017716 pacid=23155555 polypeptide=Lus10017716 locus=Lus10017716.g ID=Lus10017716.BGIv1.0 annot-version=v1.0 MAEQGAGRSSDGKHQPSRITVPTTREQNVVSTVNLCCELDLVQLALRSHSMVYDPRRYSAFSLRLRNPETMAIIFASGKMICAGAKSEANSNLAARVFVR IIQKLGFPVRFEDFTIHDKDFEIENVLVRRSNPLTELSGRKEARLNIVARKSKRKRKSKFNYISSAFSNLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10017716 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10024678 [exp]	3.5	0.8280
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	4.5	0.8363
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	8.2	0.8281
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	12.0	0.8134
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	12.2	0.8148
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	15.9	0.8116
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	16.7	0.8052
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	17.7	0.8052
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	19.0	0.7936
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	20.2	0.7901

Compare expression of checked genes

Lus10017716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.