Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49190 152 / 5e-40 O-acyltransferase (WSD1-like) family protein (.1) AT5G53390 147 / 1e-38 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 147 / 2e-38 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 144 / 2e-37 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 139 / 1e-35 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 130 / 2e-32 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 129 / 2e-32 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 129 / 4e-32 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G53380 126 / 4e-31 O-acyltransferase (WSD1-like) family protein (.1) AT5G37300 103 / 2e-23 WSD1 O-acyltransferase (WSD1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033678 [exp] 920 / 0 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 763 / 0 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 405 / 3e-137 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 393 / 2e-132 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 368 / 1e-122 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 161 / 3e-43 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 157 / 8e-42 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 143 / 5e-37 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 80 / 8e-17 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010500 [exp] 497 / 3e-173 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 488 / 1e-169 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 457 / 2e-157 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 436 / 3e-149 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 432 / 6e-148 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 170 / 1e-49 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 156 / 1e-41 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 139 / 2e-35 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 129 / 3e-32 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 123 / 5e-30 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017717 pacid=23155479 polypeptide=Lus10017717 locus=Lus10017717.g ID=Lus10017717.BGIv1.0 annot-version=v1.0 ATGGAAATGAAGAAAATGCCACTAGAGCATGAGGTTAAAGAAGATGAGGAAGAACACCGGTGGCGGCCGGTGAGCCCATTCGGCGTCTACTTCCACAGCC AATCGATACAACTCTCGGTCATCGCCGTTCTCGAGATCGAACAACCCATCAACATCCTTCACTCCGACATGGTCTCCCTTGTCCACGCCCTCCTTCTCCC TCTCCACCCTCGATTCTCTTCCATCATTGTAAGAGCTCTTATGGCTTTCTTTCTTGGTATTGTTTCGAAACTTCGGGTAGAGCTGTCAAACATGCAGGTC GATTGGGTAACAGGGAAAGACGGAGAACAGCGATGGAAGAAAGTGGAAATAAGCGTGAAGGACCACATCAGAACCGCCGTTTTCCCGGCCGGAAAATCAC CGGAATACTACGAAAAATGCTTACAGGACTACCTCTCCAAGCTCTCCGCCGAACAGTTCCCGGAGACCCATCCGCTGTGGGAGATCCACTTCTTCAAATA CCCGACAACGACGGCGGCGGGCCACCTGATCTTCAAAATTCACCACGCCATCGGCGATGGCTACTCACTCATGGCGGCACTCTTGTCCTGTTTCAAGAGG TCTGACGACCCGTCACTCCCGTTGACATTTCCCAACAACCGGATTCGGCGGCAGGATGATGACGTGGAAGGCGGCGGCGGCTGGAGGAGGACAAAGACGG CGGCTGTTTTTTCCAGGGTTTTGTCGGCGGCTGTGAACACGACATCGGATATGTGGCTGAGCTTCTCGAAGGCGAAGGTGGCGGCAGATGGTATCTCGCC GATACGGTCCGGGGAGATCGGAGTCGGGTACCGGCCGATCTCGGCGGCCACGATAACTTTCTCGCTTGATCAGATTAAGGAAATGAAGAGCCGTTTGGGA GTGACGGTAAATGACATCGTGACGAGCATTGTGTTCCTCGGGACGCGGATGTACATGCAAAAAGTGAAACCAGGATCGGAAGATGCAGACACGACAGCCA TCGTGCTACTAAACACGAGGATGCTACGGAGCTACAACTCGGTAAAGGATATGATGAAACCGGATACCGAATCACCATGGGGGAACCGGTTTGCTTTCCT GCACATCACCTTACCCAAGCTCATCGTCCCAAGAGACAGTGCCGAAAGCTGGACCGCGACGATGCGTCGTCGTTCAATCGAGTTCTTGAATGCTTCCCGT ACGATTATCCGGAACAAGCGATCCTCCATTGCCGTTCACCTCAATGCTAAGCTGCTCGATATTTACTGGAGACTCAAGGGCTCCGAGGCAGCAGCAACAT ATGTGTACTTGGCAGTGAAGAACACAAGCATGGCAATAACAAACATGATTGGGCCAACAGAGAAGATGACACTAGCTGATCATGATGTCAAAGGCATGTA CTTCCTCATCGCCGGAAATCCTCAGAACGTTACGGTTACAATGGTGAGCTACATGGGGCAGATGAGAGTAACTGTAGGAGCAGAGAAGGGCTTCATTGAT CCCAACAAGCTCAAATCCTGCATTCAAGCTGCTTTCGACCTCCTTCTCGACTCTACCAATTGA
AA sequence Show only first row Show all	>Lus10017717 pacid=23155479 polypeptide=Lus10017717 locus=Lus10017717.g ID=Lus10017717.BGIv1.0 annot-version=v1.0 MEMKKMPLEHEVKEDEEEHRWRPVSPFGVYFHSQSIQLSVIAVLEIEQPINILHSDMVSLVHALLLPLHPRFSSIIVRALMAFFLGIVSKLRVELSNMQV DWVTGKDGEQRWKKVEISVKDHIRTAVFPAGKSPEYYEKCLQDYLSKLSAEQFPETHPLWEIHFFKYPTTTAAGHLIFKIHHAIGDGYSLMAALLSCFKR SDDPSLPLTFPNNRIRRQDDDVEGGGGWRRTKTAAVFSRVLSAAVNTTSDMWLSFSKAKVAADGISPIRSGEIGVGYRPISAATITFSLDQIKEMKSRLG VTVNDIVTSIVFLGTRMYMQKVKPGSEDADTTAIVLLNTRMLRSYNSVKDMMKPDTESPWGNRFAFLHITLPKLIVPRDSAESWTATMRRRSIEFLNASR TIIRNKRSSIAVHLNAKLLDIYWRLKGSEAAATYVYLAVKNTSMAITNMIGPTEKMTLADHDVKGMYFLIAGNPQNVTVTMVSYMGQMRVTVGAEKGFID PNKLKSCIQAAFDLLLDSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	0	1
					Lus10024490 [exp]	2.4	0.8797
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10043023 [exp]	4.9	0.8405
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10002776 [exp]	9.0	0.7953
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	11.7	0.8510
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	12.5	0.8074
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	13.8	0.8208
					Lus10007244 [exp]	13.9	0.7898
					Lus10029087 [exp]	16.5	0.7998
AT2G48060			unknown protein		Lus10029968 [exp]	22.2	0.7254
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	22.2	0.7914

Compare expression of checked genes

Lus10017717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.