Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49190 175 / 1e-48 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 165 / 3e-45 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 165 / 4e-45 O-acyltransferase (WSD1-like) family protein (.1) AT5G53390 159 / 3e-43 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 157 / 2e-42 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 156 / 7e-42 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 148 / 4e-39 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 147 / 1e-38 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 139 / 7e-36 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G37300 121 / 1e-29 WSD1 O-acyltransferase (WSD1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033678 [exp] 765 / 0 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 759 / 0 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 399 / 3e-135 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 388 / 8e-131 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 375 / 4e-126 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 181 / 1e-50 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 174 / 6e-48 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 158 / 1e-42 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 86 / 9e-19 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010500 [exp] 488 / 4e-170 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 476 / 2e-165 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 449 / 9e-155 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 431 / 7e-148 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 423 / 1e-144 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 168 / 3e-49 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 172 / 1e-47 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 155 / 2e-41 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 146 / 3e-38 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 141 / 1e-36 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017718 pacid=23155435 polypeptide=Lus10017718 locus=Lus10017718.g ID=Lus10017718.BGIv1.0 annot-version=v1.0 ATGGAAACGAAGAATCAGCCATTAGAGCATGAGAATAAAGAAGGAGAAGAAGAACGTCGGCCGCTGCCGCCGGTGAGCCCAATGGGGGTCTACTTCCACA GCCAATCAATACAACTTTCAATCGTCGCTGTTCTGGAGATGGAAGAACCAATTCACCTCCTTCACTCTGACATCGCCTCCCTTATCCAAACCCTCCTTCT CCCTATTCACCCTCGCTTCTCTTCCATCATTGTAACAGAGCAGGACGGAGAACAGCAATGGAAAAAAGTGGAAATAAACGTGAACGACCACATCAGAACC GCTGCCTTCCCGGCCGGAAAAACACCGGAGTACTACGACACTTGCTTTCAAGACTACCTCTCGAAGCTCTCCGCCGACCAGTTCCTGGAGACCCGTCCGC TGTGGGAGATCCACTTGTTCAACTACCCGACAGCAGCGGCGGGGAGTCAGGTTATCTTCAAAATTCACCACGCCATAGGCGACGGCTACTCACTCATGGC GGCGCTCTTATCCTGTTTGAAGAGGTTCGACGACCCGTCACTGCCCTTGACTTTTCCCAACAACCGGATTCGGCTGCCGCATGATGCCGTGGTAGGAGGC GGCGGTGGCTGGAGGAGGAAGACGGCGGCGGTTTTTACCAGAGCTTTGTTGGGGGCTGTGAATACGGTGTCGGATTTGTGGCTGAGCTTCTCGAAGGTGA AGGTGGCGGCAGATGATATCTCGCCCATACGGTCCGGGGAGATTGGAGTCGGGTACCGGCCAGTATCGGCGGTTACGTTGACGTTCTCGCTTGATCAAAT TAAGGAGATCAAGAGCCATTTGGGAGTGACGGTAAATGATGTCGTGACGAGCATTGTATTCCTCGGAACACGAATGTACATGCAAGAAGTGAAATCAGGA TCGGAAGATGCAGAGACGACGGCCCTCGTACTACTAAACACAAGGATGCTACGAGGCTACAAGACGCTCAAGGACATGATGAAGCCGGATACCGAAGCTC CATGGGGGAACAAGTTTGCTTTCCTCCACATCCCCTTACCCAAGCTCATGATCGGAAGAGACGGTGCCGGAAAGTTGACAGCGACCATGCGACTTCGTTC GGTCGAGTTCTTGAAGGCTTCAAGTAGGATTATCCAGAACAAGCGCTCCTCCCTTGCCGTTCACCTCAATGCTAAGATGCTCGATCTTTACTGGAGACTC AAAGGCTCCGAGGCAGTAGCGGCATATGTGTACAAGGTAGTGAAAAACACAAGCATGGCAATATCCAACATGATTGGGCCAACTGAAAAGATGACACTAG CTGGTCATCATGTCAAAGGCATCTACTTTCTCGCCGCCGGCAATCCTCAGAACCTTACGTTTACAATGATGAGCTACATGGGACAGATGAGAGTAACCAT AGGAGCAGAGAAGGGCTTCATTGATCTCAACAAGCTCAAATCCTGCATTCAATCTGCTTTCGACCTCCTTCTCGACTCTACCAATTGA
AA sequence Show only first row Show all	>Lus10017718 pacid=23155435 polypeptide=Lus10017718 locus=Lus10017718.g ID=Lus10017718.BGIv1.0 annot-version=v1.0 METKNQPLEHENKEGEEERRPLPPVSPMGVYFHSQSIQLSIVAVLEMEEPIHLLHSDIASLIQTLLLPIHPRFSSIIVTEQDGEQQWKKVEINVNDHIRT AAFPAGKTPEYYDTCFQDYLSKLSADQFLETRPLWEIHLFNYPTAAAGSQVIFKIHHAIGDGYSLMAALLSCLKRFDDPSLPLTFPNNRIRLPHDAVVGG GGGWRRKTAAVFTRALLGAVNTVSDLWLSFSKVKVAADDISPIRSGEIGVGYRPVSAVTLTFSLDQIKEIKSHLGVTVNDVVTSIVFLGTRMYMQEVKSG SEDAETTALVLLNTRMLRGYKTLKDMMKPDTEAPWGNKFAFLHIPLPKLMIGRDGAGKLTATMRLRSVEFLKASSRIIQNKRSSLAVHLNAKMLDLYWRL KGSEAVAAYVYKVVKNTSMAISNMIGPTEKMTLAGHHVKGIYFLAAGNPQNLTFTMMSYMGQMRVTIGAEKGFIDLNKLKSCIQSAFDLLLDSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	0	1
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	2.8	0.9309
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	3.5	0.9173
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	5.3	0.9220
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	5.6	0.8746
AT4G02920			unknown protein		Lus10042685 [exp]	6.5	0.9171
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	6.7	0.9210
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	7.1	0.9266
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	8.0	0.8935
AT4G02920			unknown protein		Lus10029640 [exp]	8.3	0.9232
AT1G44000			unknown protein		Lus10029738 [exp]	8.5	0.8984

Compare expression of checked genes

Lus10017718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.