Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24060 157 / 3e-50 Plant self-incompatibility protein S1 family (.1) AT3G24065 44 / 3e-06 Plant self-incompatibility protein S1 family (.1) AT1G26798 40 / 0.0001 Plant self-incompatibility protein S1 family (.1) AT1G26799 40 / 0.0001 Plant self-incompatibility protein S1 family (.1) AT5G06020 39 / 0.0003 Plant self-incompatibility protein S1 family (.1) AT3G24068 37 / 0.0009 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023675 [exp] 190 / 3e-63 AT3G24060 162 / 3e-52 Plant self-incompatibility protein S1 family (.1) Lus10011754 [exp] 174 / 2e-57 AT3G24060 152 / 1e-48 Plant self-incompatibility protein S1 family (.1) Lus10033675 [exp] 119 / 2e-35 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1) Lus10030565 [exp] 47 / 3e-07 AT3G16970 91 / 7e-24 Plant self-incompatibility protein S1 family (.1) Lus10029375 [exp] 38 / 0.0006 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10021633 [exp] 38 / 0.0007 AT4G29035 57 / 4e-11 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175200 [exp] 175 / 2e-57 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.001G053100 [exp] 174 / 5e-57 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 65 / 5e-14 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 54 / 1e-09 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 53 / 2e-09 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.001G053200 [exp] 50 / 1e-08 AT3G24060 56 / 1e-10 Plant self-incompatibility protein S1 family (.1) Potri.003G175100 [exp] 46 / 6e-07 ND / Potri.002G263900 [exp] 43 / 6e-06 AT3G24060 46 / 5e-07 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 42 / 2e-05 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.003G175000 [exp] 40 / 8e-05 AT3G24060 46 / 7e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10017719 pacid=23155510 polypeptide=Lus10017719 locus=Lus10017719.g ID=Lus10017719.BGIv1.0 annot-version=v1.0 ATGGCAGCTCTTGTAATCCTGCTGCTGTCAGCCTGGAACCAATCGGAGGATTCCATATGGACAGAGCAGGAGTACGATGTCCGAGTGATTAACGGATTCA GGGACAACTCGTCTCTTCCACTGGTCATATGGTGCTCTTCTTCCTCGAAGGACGACGAGCACGTCGATCTCGGAGGGAGAGCGCTTCAGGAAGGCGACGA TTTCGGGTGGATCCTGAGGACCAGGTTCTGGGACAGCAGCAGCGTCAGGGTCCTGTGCACGATGAAGTGGGATGGGAAGAGGAGGAAGTTCGAGGCGTTT AAGGTTCCGAGGGATCTAAGGAGGTGTAATCCGACGAGGAAGTGCTCTTGGTTGGTTAGGGAGGATGGGTTCTATTTCAGCAGCGATGAGGTTAACTGGA AGAAAGACTTCTCTTGGGATTCTTAG
AA sequence Show only first row Show all	>Lus10017719 pacid=23155510 polypeptide=Lus10017719 locus=Lus10017719.g ID=Lus10017719.BGIv1.0 annot-version=v1.0 MAALVILLLSAWNQSEDSIWTEQEYDVRVINGFRDNSSLPLVIWCSSSSKDDEHVDLGGRALQEGDDFGWILRTRFWDSSSVRVLCTMKWDGKRRKFEAF KVPRDLRRCNPTRKCSWLVREDGFYFSSDEVNWKKDFSWDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	0	1
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	3.0	0.9913
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	4.2	0.9913
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	5.2	0.9913
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	6.0	0.9898
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	6.7	0.9897
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	7.3	0.9889
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	7.9	0.9875
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	8.4	0.9867
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	8.5	0.9872
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	9.0	0.9871

Compare expression of checked genes

Lus10017719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.