Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69770 764 / 0 CMT3 chromomethylase 3 (.1) AT1G80740 684 / 0 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1) AT4G19020 681 / 0 CMT2 chromomethylase 2 (.1) AT4G14140 187 / 1e-48 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G13610 187 / 2e-48 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G08990 186 / 3e-48 DNA (cytosine-5-)-methyltransferase family protein (.1) AT5G49160 176 / 6e-45 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014315 [exp] 1080 / 0 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 1067 / 0 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 589 / 0 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10004295 [exp] 187 / 2e-48 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10019220 [exp] 184 / 1e-47 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10033679 [exp] 149 / 4e-41 AT1G69770 89 / 2e-20 chromomethylase 3 (.1) Lus10008527 [exp] 49 / 2e-05 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 48 / 3e-05 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10037903 [exp] 47 / 9e-05 AT5G11470 183 / 1e-49 bromo-adjacent homology (BAH) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009600 [exp] 888 / 0 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 696 / 0 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.003G215800 [exp] 218 / 2e-60 AT1G69770 221 / 7e-62 chromomethylase 3 (.1) Potri.018G138000 [exp] 191 / 1e-49 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.T046100 [exp] 191 / 1e-49 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 190 / 2e-49 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10017720 pacid=23155507 polypeptide=Lus10017720 locus=Lus10017720.g ID=Lus10017720.BGIv1.0 annot-version=v1.0 ATGACTGGAAAGCGTAAATCCTCCAAGCTCTCTGCCCCAAGATACCCAGCTAGGAAGAGCGCGAGGAAAAATCCGAAGAACGGCGGCGGTGCAGCGACGA CGACGACCGACGAGTTGCACCCTTCTGAAGAGCAGCAAATGGAATCCACTTCCGCCACCGAGAATGGGGTCTTCAGTTCTAGCCCCAGTCCGAAATCAGA GGTTCCGACGGCTAATGATTCGGTCGAGAAACCTTCTCCGAAATTGAAATCGACATATAAGTCTCCGGTGAAGAAAATGGAAGACATGACTGATGAAGGG GATGAGTCTGATGCGAGAGTTTTGGGGGATCCGGTGCCGGAAGAGGAAGCGAAGGAACGGTGGCCTCATCACTATGTTAAGAAGGTGAAGAAGCAAATGA AAAGTTCAAGTGACGATGATGAAGATGAGGTTATGGAAGCTCGCCGGCATTATTCACGAGCTGAAGTTGATGGGGTTGAATATAAACTTAATGATAATGC ACATGTGAAGGGCGAAGATGGTCAGGATAATTATATATGCAAGATAGTGGAAATATTTGAGGATGTTGATGGAGATCTACATTTCACTGCTCAGTGGTAC TATCGAGCTACAGACACGATTATCGAAGAAGCTCATCCAATAGACAAGAAGCGAGTTTTCTTGTCGGAAGTGAAGAATGACAATCCGCTCAACTGTCTTG TGGGGAAGCTGAACATTCTGATGCGACGACTCGACGTGGTCAAGGAATTGAATGCTATTCCACCTTGTGACTACTATTGTGATGCTATGTATCTGCTTCC ATACGCTACATTTATCAAGCTGCCATCTGAAATTACAGATAGAAGTGAAAGTTCATCGACTGTATCGCAGTCATGTGAAGATTCCCTGCCAAGTTGCAGG TCGAAGGCGTTTACTCTTCTGGACTTGTATTCTGGTTGTGGTGGGATGTCAACTGGACTTTGTCTTGGCTCCAAATTGTCTGGTCAAGAACTTGTTACTA AATGGGCAGTTGACCTCAATAAGCATGCTTGTGATAGTCTCAAACTTAATCATCCAGAAACTGAGGTGAGGAACGAGACAGTCGACGACTTCCTAGCACT GCTTTTGGAATGGGAGAAACTGTGCATCAGATTTTCGATGATCAGTAGTAGTGACCCCGAGAAGAAACAGTCGTACCTGTTCGATGCAGAAGAAGATGAC GGTGACGAATCAGATGCTGATGATGGTGAGAATGATGGCGAAATTTTTGAAGTTGAGAAGATTCTTAGCATCTGCTATGGTAAACCTGATGACAAGCCCC GCGATTTGTATTTTAAGGTTAAGTGGAAGGGTTATGGACCTGAACACGACTCGTGGGAGCCGATAAGTGGTTTGGGAAACTGCCTCAAAGTTATCAGGGA GTTTGTCACCGATGGCTTTAATAGGCAGATTCTACCTGTGCCGGGTAGTGCAGATGTGCTCTGTGGAGGGCCACCTTGTCAAGGTATCAGTGGTTTCAAC AGGTTCAGAAATAAAGCGAAACCGTTGGAGGATGAGAAGAACAGGCAGCTCACAGTTTACATGGACGTTGTGAATTTCCTCAAGCCCAAGTTTGTTCTCA TGGAAAACGTTGTAGACATATTGAAGTTTGCTGAAGGATTTCTTGGAAGGCACGCTGTAGGTCGCCTCATTGATATGAACTACCAGACTAGAATTGGCAT TATGGCTGCTGGAACATATGGACTTCCCCAGTTCCGGATGCGTGTTTTCTTGTGGGGTGCACTTCCGACTGAGGAGTTGCCACCATATCCATTGCCAACC CATGACGTCCTTGTGAGAGGTGGTATACCTAGCAAGTTCGAGAGATGTGTTGTGGCTTACAATGAGGGTGTTAAAGTTGATTTGAAAAAGAAACTTCTCC TGGGAGATGCACTCTCAGACTTGCCTCCGGTGGAGAACAATGAGCACCGTGACGAAATGTCTTACAGGAAGGAGCCAGAAACAGAATTTCAGCAGTTGAT TAGATTTAGGAACTCTGAAGCATTGGATCTCTCTGCACACTCATTGAACTCTCACCGCCCACTCAAGCTCAATGATGATGATTATGAGAGAGTTCGCCAA ATACCCAAGAAAAAGGGTGCTAACTTCAGGGATTTACCCGGTGTCATTGTACGTGGGGACAACAAGGTGGAGCTAGATACCACAATTGAGAGACCGCTTG TGAAGTCTGGAAAGCCTTTGTGTCCGGATTATGCAATTAGTTTCATGGATGGCACATCGTCTAAACCATTTGGTCGTCTTTGGTGGGATGAAACTGTGCC CACTGTAGTGACTAGAGCGGAGCCACACAATCAGGTTATCTTACACCCTCTGCAAGACCGAGTATTGACCGTTCGAGAAAATGCACGACTCCAAGGCTTT CCTGATCAGTACAAACTGACCGGTCCCATCAAGGAAAGATACATCCAGGTGGGGAATGCAGTAGCAGTACCAGTGGCTCGAGCTCTCGGATTCTCGCTAG GGAAGGCTCTGGTACATAACGTCGAGCGAGAGCCTCTATTCACCTTGCCGAGTAACTACCTTGATATAGCAAATCCGACTGCTTCAGCTTCATCACAGGA CGATGCCTGA
AA sequence Show only first row Show all	>Lus10017720 pacid=23155507 polypeptide=Lus10017720 locus=Lus10017720.g ID=Lus10017720.BGIv1.0 annot-version=v1.0 MTGKRKSSKLSAPRYPARKSARKNPKNGGGAATTTTDELHPSEEQQMESTSATENGVFSSSPSPKSEVPTANDSVEKPSPKLKSTYKSPVKKMEDMTDEG DESDARVLGDPVPEEEAKERWPHHYVKKVKKQMKSSSDDDEDEVMEARRHYSRAEVDGVEYKLNDNAHVKGEDGQDNYICKIVEIFEDVDGDLHFTAQWY YRATDTIIEEAHPIDKKRVFLSEVKNDNPLNCLVGKLNILMRRLDVVKELNAIPPCDYYCDAMYLLPYATFIKLPSEITDRSESSSTVSQSCEDSLPSCR SKAFTLLDLYSGCGGMSTGLCLGSKLSGQELVTKWAVDLNKHACDSLKLNHPETEVRNETVDDFLALLLEWEKLCIRFSMISSSDPEKKQSYLFDAEEDD GDESDADDGENDGEIFEVEKILSICYGKPDDKPRDLYFKVKWKGYGPEHDSWEPISGLGNCLKVIREFVTDGFNRQILPVPGSADVLCGGPPCQGISGFN RFRNKAKPLEDEKNRQLTVYMDVVNFLKPKFVLMENVVDILKFAEGFLGRHAVGRLIDMNYQTRIGIMAAGTYGLPQFRMRVFLWGALPTEELPPYPLPT HDVLVRGGIPSKFERCVVAYNEGVKVDLKKKLLLGDALSDLPPVENNEHRDEMSYRKEPETEFQQLIRFRNSEALDLSAHSLNSHRPLKLNDDDYERVRQ IPKKKGANFRDLPGVIVRGDNKVELDTTIERPLVKSGKPLCPDYAISFMDGTSSKPFGRLWWDETVPTVVTRAEPHNQVILHPLQDRVLTVRENARLQGF PDQYKLTGPIKERYIQVGNAVAVPVARALGFSLGKALVHNVEREPLFTLPSNYLDIANPTASASSQDDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	0	1
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	1.0	0.9646
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	2.8	0.9604
AT4G13690			unknown protein		Lus10000756 [exp]	3.7	0.9503
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	4.9	0.9539
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	5.0	0.9520
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	6.0	0.9571
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	6.3	0.9502
AT4G15140			unknown protein		Lus10003804 [exp]	6.9	0.9140
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	7.3	0.9514
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	8.1	0.9431

Compare expression of checked genes

Lus10017720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.