Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49210 158 / 2e-42 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 155 / 2e-41 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 154 / 4e-41 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 148 / 3e-39 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G22490 142 / 5e-37 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 135 / 9e-35 O-acyltransferase (WSD1-like) family protein (.1) AT5G37300 134 / 3e-34 WSD1 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 130 / 1e-32 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 124 / 7e-31 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 115 / 1e-27 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033680 [exp] 862 / 0 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 414 / 4e-141 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 409 / 7e-139 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 400 / 2e-135 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 357 / 5e-119 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 156 / 5e-42 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 144 / 7e-38 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 139 / 1e-35 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 89 / 5e-20 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139600 [exp] 539 / 0 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 528 / 0 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 484 / 7e-169 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 482 / 9e-168 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 473 / 2e-164 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 184 / 3e-55 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 159 / 7e-43 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 154 / 2e-41 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 140 / 2e-36 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 132 / 2e-33 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017721 pacid=23155583 polypeptide=Lus10017721 locus=Lus10017721.g ID=Lus10017721.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCACACGATGAAGAAGCGATGACGATGGAGTACTCCGAACCGGTGAGCCCGACTGGCGAATACTTGAGCACATCCGTCTTCACACTCTCCA TTATAGCGGTTCTCGAATCAGAAACTCCGCTCGACGACCTCCAAACTCGCTCTTTGCTTCACGATCTGTTCCTCCCCATCAGCCCCCGGTTCTCCTCCAT CATGGTTACAAATGCAAGAGGCGTGAAGAAGTGGAGCAAGGTACAAGTAAAGTTGGATGATCACATAAAAGCACCAAAGTTTCCAACAAACATGTCAACA GATTTCTATGACAAGTGCCTCGAAAAGTATTTATCGTATTTGGGGATGTCACCGTTTCCGGAAGGTAAACCCTTGTGGGAAGTTCATGTCATAAAGTACC CTACGAGTGGTGCAGTCGGAAGCATCATCTTCCGACTGCATCACTCTCTCGGTGACGGCTACTCCTTGATGGGCGCGCTTCTTTCCTGCTTGAAAAGGGC CGATAACCCTTCGCTTCCATTAACTTTCCCGTCCCAGGGAAAAAGTAGTAGTGGTGGTGGTGGCTGTAGTGTAGCTGGATCGGTTTCTTCTGCGGTCATG AATACGGTGTCAGATCTTTGCTCGAAGGGCGGGTTGGCGGAGGACAGCAAATCGGCAGTGCGATCGGGCCACGACATGGTTGAGTTCTCGGAAACTTCCA TCGTGACCATGGATTTTTCCATGGATGATGTCAAGCAAATCAAGTTGAAACTTGGTGTGACAGTGAACGATGTCATATGCGGTGCGGTATTCCTCGGAGT TCGGATCTACATGGAAGGAGTTGATGCAGGGTCAGGGTTCAGTGCAGAGGCAACATCACTAGTTCTGCTCAATACAAGAATGGTTCATCAGGGCTACAAA TCAGTGAAGGAAATGGTGAAGCCTGGATCTGACTTGCCCTGGGGCAACCATTTCGCCTTCCTACTCATCTCGGTTCCTAACCTACCCGATCTCAACAAAG ACGTTATTGGTTCGGGTACTTCTCGCGGGTTCGACCCTCTCGGGTTTGTGCTCAAGACTCATCAAATCGTCAAGCGAAAGAGGACCTCGTTGGCCCTCTA CTTCATGGCCAAGTACCTCCAACTTCTGAGGAAGTTGCGAGGCCCTGAGGCCGTTTCTCGATACTTGTATGACACGATGAAGAACACGAGTTTCGGAATA ACGAACGTAATAGGTCCGGTCGAGAAGATGGCTTTGGCGAATCATCCGATCAAAGGCTTGTACTTTCTCGTTACCGGTGCACCTCAGAGTATGAATGTAT CCATAATGAGCTACGTGAACCAACTTCGGGTTGTTGTAAAAGTGGAGAGGGACTTCATAGATTCCCAGAAGTTGAAGTGTTGCATAGAAGAATCTTTTGC CAAGATATACGAAGCTGCTTGTGGAAAGAAAATTTGA
AA sequence Show only first row Show all	>Lus10017721 pacid=23155583 polypeptide=Lus10017721 locus=Lus10017721.g ID=Lus10017721.BGIv1.0 annot-version=v1.0 MAAAHDEEAMTMEYSEPVSPTGEYLSTSVFTLSIIAVLESETPLDDLQTRSLLHDLFLPISPRFSSIMVTNARGVKKWSKVQVKLDDHIKAPKFPTNMST DFYDKCLEKYLSYLGMSPFPEGKPLWEVHVIKYPTSGAVGSIIFRLHHSLGDGYSLMGALLSCLKRADNPSLPLTFPSQGKSSSGGGGCSVAGSVSSAVM NTVSDLCSKGGLAEDSKSAVRSGHDMVEFSETSIVTMDFSMDDVKQIKLKLGVTVNDVICGAVFLGVRIYMEGVDAGSGFSAEATSLVLLNTRMVHQGYK SVKEMVKPGSDLPWGNHFAFLLISVPNLPDLNKDVIGSGTSRGFDPLGFVLKTHQIVKRKRTSLALYFMAKYLQLLRKLRGPEAVSRYLYDTMKNTSFGI TNVIGPVEKMALANHPIKGLYFLVTGAPQSMNVSIMSYVNQLRVVVKVERDFIDSQKLKCCIEESFAKIYEAACGKKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	0	1
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	3.2	0.7774
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	8.8	0.7124
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	9.2	0.7502
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	9.8	0.7267
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	12.0	0.6977
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	13.2	0.7320
					Lus10029851 [exp]	14.7	0.7506
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	15.0	0.7250
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	17.4	0.7432
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	20.0	0.7166

Compare expression of checked genes

Lus10017721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.