Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19950 62 / 2e-11 RING/U-box superfamily protein (.1) AT1G18770 55 / 6e-10 RING/U-box superfamily protein (.1) AT5G59550 57 / 8e-10 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G13228 57 / 9e-10 RING/U-box superfamily protein (.1) AT5G37270 56 / 1e-09 RING/U-box superfamily protein (.1) AT1G68180 56 / 1e-09 RING/U-box superfamily protein (.1) AT5G37230 56 / 2e-09 RING/U-box superfamily protein (.1) AT5G37250 55 / 3e-09 RING/U-box superfamily protein (.1) AT3G15740 54 / 4e-09 RING/U-box superfamily protein (.1) AT2G29840 54 / 9e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033682 [exp] 330 / 1e-116 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10028009 [exp] 73 / 2e-16 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10012376 [exp] 72 / 6e-16 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10006279 [exp] 74 / 9e-16 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034793 [exp] 66 / 1e-13 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020558 [exp] 66 / 2e-13 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10007628 [exp] 67 / 6e-13 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10012819 [exp] 61 / 2e-11 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10030464 [exp] 61 / 3e-11 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 67 / 1e-13 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 66 / 4e-13 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G083001 [exp] 64 / 3e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 61 / 2e-11 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 59 / 1e-10 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 58 / 3e-10 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 58 / 4e-10 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 56 / 2e-09 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 54 / 7e-09 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.013G116000 [exp] 54 / 1e-08 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017722 pacid=23155509 polypeptide=Lus10017722 locus=Lus10017722.g ID=Lus10017722.BGIv1.0 annot-version=v1.0 ATGTCGCACTCAAGGACCGCAGCTGATTTCCAGCAGAGAAGAAGAATAAACCCCGACGACTGGGAATTCACCGACGATGTCCTGATTCTCAACGGAACAA TCCTCTCGCCGCCGCTTCAATATCCACTCACTCCCTCCCAGCAGATGGAGATGATCAATCGAGTTCACGAATTCGAAACTAGAACAAGAACTGCCACAAA CGACAACAGCAACAACAACTCTGGCAACGACCCTACCCGCAGGTTCCGTCCGGCGAGACGGATCCTGGTGGAGCAGGATCTGGTGGAAGGAACTGTTCTG ATAGCCGAAGTTGAATTGGACAGAGAGCCGACGTCGGTGCCTGAATATGGGTTTCATCAATTCGTCACGACCCCTGCTCCGGAATCTGTAATCGAAGGGC TCGAAAGGCTCGAAATCGGAGGAGTAATGGCCGGAAGAGAGGAAGGCGTCTGTGTGATTTGTCTAGAGGAGATGGAGGAAAGTGGTGGAGAAAGAGTGAT GATAAGAATGGAGTGTGGGCATATGTTCCATGAGAGTTGCTCTGTTTCTTGGCTACGTGTTTCCGACTTTTGCCCCTTGTGTCGGTTTCCTTGTTCCTAA
AA sequence Show only first row Show all	>Lus10017722 pacid=23155509 polypeptide=Lus10017722 locus=Lus10017722.g ID=Lus10017722.BGIv1.0 annot-version=v1.0 MSHSRTAADFQQRRRINPDDWEFTDDVLILNGTILSPPLQYPLTPSQQMEMINRVHEFETRTRTATNDNSNNNSGNDPTRRFRPARRILVEQDLVEGTVL IAEVELDREPTSVPEYGFHQFVTTPAPESVIEGLERLEIGGVMAGREEGVCVICLEEMEESGGERVMIRMECGHMFHESCSVSWLRVSDFCPLCRFPCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19950			RING/U-box superfamily protein...		Lus10017722 [exp]	0	1
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10034071 [exp]	16.9	0.8921
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	24.3	0.8796
AT4G35690			Arabidopsis protein of unknown...		Lus10041835 [exp]	28.4	0.8792
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007560 [exp]	32.6	0.8782
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	36.5	0.8778
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	40.7	0.8728
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	41.9	0.8775
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030585 [exp]	52.1	0.8691
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030490 [exp]	54.6	0.8684
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	57.5	0.8683

Compare expression of checked genes

Lus10017722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.