Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 241 / 7e-79 Protein of unknown function (DUF506) (.1) AT2G20670 219 / 2e-70 Protein of unknown function (DUF506) (.1) AT3G07350 119 / 2e-31 Protein of unknown function (DUF506) (.1) AT4G14620 109 / 1e-27 Protein of unknown function (DUF506) (.1) AT2G38820 107 / 4e-27 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G22970 104 / 2e-26 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G25240 104 / 3e-26 Protein of unknown function (DUF506) (.1) AT3G54550 96 / 5e-23 Protein of unknown function (DUF506) (.1) AT2G39650 96 / 7e-23 Protein of unknown function (DUF506) (.1) AT1G12030 95 / 2e-22 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033683 [exp] 479 / 2e-172 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 318 / 1e-108 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10011174 [exp] 233 / 5e-75 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 230 / 3e-74 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 130 / 9e-36 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 127 / 2e-34 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10018603 [exp] 119 / 1e-32 AT4G32480 106 / 5e-28 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 108 / 2e-27 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10024840 [exp] 108 / 6e-27 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129900 [exp] 291 / 1e-98 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 289 / 1e-97 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.004G044300 [exp] 245 / 3e-80 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 238 / 1e-77 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 141 / 3e-40 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 134 / 1e-37 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 122 / 1e-32 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.002G071500 [exp] 119 / 4e-32 AT1G77160 155 / 2e-46 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 116 / 3e-31 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 111 / 4e-29 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10017723 pacid=23155433 polypeptide=Lus10017723 locus=Lus10017723.g ID=Lus10017723.BGIv1.0 annot-version=v1.0 ATGGAACAACCCTACTCTCTCTACCGTTGGAACTCCGACGACTCTTCCTCCAGCAGCTTTTCCGACGAATCCGCCAGCTTCTCCGACATCGTCTTCGGGT TCTTTGATGAACCCGGTCAGGAATCCCCCAAGAGCTCTTGCAGTAGCAGCAGCTCCAATGATTTCCCCGACGACGACGAGGAGGAGAACTCCAGCGATCA GGAAGAGAAGAAGAAATTCTGGGAAATCCAGAACGATCTCCTTCGGGCGACTTTATACAGAACATCCACTCTGGAAACAAAGATCCGGCAGGATACTAAA GAGGCTCTGACAGAAATTGAAAAGATCGGATTGAACTGCGTTTGCCCGGAATCTGACGTCAGCTGCCGGAATTGTCTCCGGAGGGAAGTCTCCGTCCGGC TACAGAGTCAAGGTCACAATTGCGCCATTTGTAAATCCAAGTGGAAGGCCTCCGGCAACGACATCTTACCTGGTGAACACAGTTACTTGGAAGTGGTGGA GGATTCGAAGAGAGGGGAAGTGAGGGTGATAATCGAGCTGAATTTCAAAGCGGAATTCACGATGGCGAGGGCGAGCCAGGACTACAACCAGCTGATCGGC CGGCTGCCGGAAGTGTTCGTCGGAAGGGTGGACAGGCTGAAGGCGTTGATCAAGATCCTGTGCTCTGCAGCCAAGGCGTGTATGAAGGAAAAAAAGATTC ACTTGGCTCCGTGGAGGAAGCACAAGTATATGCAGTCGAAGTGGCTGGGGAAATGCGAGAGATTCGTGCCGGCGGCGGCTCTGCCCACCGGGCAGTCTCG GCGGCGGCCGGCGAAGGCTAGAGCGTCGATGTTGACTTTTGACCTGTTGGAGACTGAAGGGATGCATTTGACTGCAGTCAAAGTTTGCTTTTGA
AA sequence Show only first row Show all	>Lus10017723 pacid=23155433 polypeptide=Lus10017723 locus=Lus10017723.g ID=Lus10017723.BGIv1.0 annot-version=v1.0 MEQPYSLYRWNSDDSSSSSFSDESASFSDIVFGFFDEPGQESPKSSCSSSSSNDFPDDDEEENSSDQEEKKKFWEIQNDLLRATLYRTSTLETKIRQDTK EALTEIEKIGLNCVCPESDVSCRNCLRREVSVRLQSQGHNCAICKSKWKASGNDILPGEHSYLEVVEDSKRGEVRVIIELNFKAEFTMARASQDYNQLIG RLPEVFVGRVDRLKALIKILCSAAKACMKEKKIHLAPWRKHKYMQSKWLGKCERFVPAAALPTGQSRRRPAKARASMLTFDLLETEGMHLTAVKVCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	0	1
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	3.7	0.8785
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10017764 [exp]	5.7	0.8725
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	10.6	0.8599
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	11.5	0.8702
AT3G26020			Protein phosphatase 2A regulat...		Lus10036926 [exp]	11.7	0.8643
AT3G07550			RNI-like superfamily protein (...		Lus10036412 [exp]	31.0	0.8514
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	36.0	0.8555
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	39.5	0.8448
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	41.4	0.8591
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	44.0	0.8553

Compare expression of checked genes

Lus10017723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.