Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24495 1250 / 0 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 253 / 6e-69 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 186 / 7e-48 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 164 / 4e-41 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 139 / 2e-33 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 111 / 9e-25 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 103 / 6e-22 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 89 / 1e-17 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 88 / 2e-17 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033095 [exp] 1819 / 0 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 249 / 1e-67 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10027452 [exp] 173 / 4e-47 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 183 / 5e-47 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10005743 [exp] 179 / 2e-45 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10000017 [exp] 157 / 7e-45 AT3G24495 103 / 2e-27 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10032469 [exp] 174 / 5e-44 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10025030 [exp] 173 / 7e-44 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10028966 [exp] 144 / 2e-36 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G156314 [exp] 1453 / 0 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 1450 / 0 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 238 / 6e-64 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 177 / 5e-45 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.015G142900 [exp] 169 / 2e-42 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121601 [exp] 162 / 6e-42 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.001G156200 [exp] 153 / 8e-38 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.008G191051 [exp] 132 / 4e-34 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G190950 [exp] 114 / 4e-27 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.011G089500 [exp] 110 / 2e-24 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05188 [flax] [poplar] MutS_II MutS domain II
Representative CDS sequence Show only first row Show all	>Lus10017724 pacid=23176305 polypeptide=Lus10017724 locus=Lus10017724.g ID=Lus10017724.BGIv1.0 annot-version=v1.0 ATGCAGACAACACTCCATTCATTCTTCCAAAAGTCCTCTCCGGCCCCGTTTAATCGGAGCTCCGGCAACAAGGACATCGCTCACTGTCAGTCGGCGGTGG ATGACACGACGAAGGAACAGATTCAGGAAACCTGTCTTCCGAGTCAGACTGTGAGCTCATCCGAGGAAGTTAGAGGGACCGATACACCTCCGGAGAAGGT TCCTCGTCAGATACTACCGCCGAACTTCTCGGCGAGTTCTGACTCTGGAGGTCCTTCGCTCTTCTCCAGCATTCTGCACAAGTTCGCGAGGGCCCCAAGC AGAGATAGTCTCGATACGAATCAGGCTGATTCAACTAGTGTTTGCTTGACTTCTGGTCTAGCTGTTGGCCGGGGAGGATTGCAGAAACTAGGGACTATTG CTGAAATTTCCCGAAAAGACGGTAGTGCTAAGTCCATTCAGCAAGAATTTGTCTTACCCTCTGATGGAGATGATGATGTCCAGGGGCCTGAAACACCTGG TTTGCAACCACTAGTTTCTCGGTTTAAGCGAATTCATGAAGAAATTCCTAAGTTAGGTGATAAGTTTGATTGTTCCTTGCTGGATACTGGCAAACGAGCA AAACTTCTACATGACTCCACTGCCTTGGGAAAGAATAAAGGAGAGGTTTCTGATGATTTAGCTAGCAAATTTGAATGGCTTAACCCTGCTAGTATCAGGG ATGCCAATAGAAGAAAGCCTGAACATCCTCTTTATGACAAAAAGACTCTTTATATCCCACCGGATGCGCTGAAGAAGATGTCAGCATCTCAGAAGCAATA TTGGACTGTCAAATCTCAATACATGGATGTTCTGCTTTTCTTTAAAGTGGGAAAGTTTTATGAGCTCTATGAGCTGGATGCTGAAATTGGTCACAAGGAG CTTGATTGGAAAATAACATTAAGTGGCGTGGGGAAATGTCGGCAAGTTGGAATATCCGAATTCGGTATTGATGATGCCATAGAGAAACTGGTTGCTCGTG GATTTAAAGTTGGGAGAGTTGAGCAGTTGGAGACAGCTGATCAAGCAAAGGCCAGAGGTGGAAGTTCGGTCATCACCAGAAAATTAGTCCAGGTTCTTAC ACCATCAACTACAACAGATGGTATTATTGGGCCAGATGCTGTTCATCTTCTTGCATTGAAGGAGGGAAATAATGGGATGGAAAGTGGCGGAACAAATTAT GGATTTGCTTTCGTTGATTGTGCTGCTCTACGCTTTTGGATCGGCTCCATACGTGATGATGCCTCCTGTTCTGCTTTGGGGGCATTGTTAATGCAAATCT CACCTAAAGAAGTTATTTACGAAAGTAGAGGTGAGGCTGGTTTCTTCATGTTAGATGTTACAGGAAATTTTAAGAAAATTGGTGCCATTGGAATAGGCTA TATGCTCGGGCTGTCCAAAGAAGCTCAGAAAGCACTTAGAAATTTCTCATTAGCTGGTTCTGCAGCACCTCAGTTGACTCCAGTGCTGCCTCCTGCTGAT TTTGAGGATGCTTCTGAAGTGAGAAATTTGATTCAGTTAAAGGGGTACTTTTCAGGGTCATCTAGCCCACTGAATAATGCACTTGACAGTTTATTCCACA AAGATCTAGCCTTATCAGCTCTTGGTGGTCTTACTGGTCATCTGTCTCGGCTGATGTTAGATGATGTTTTGCGCAATGGTGATGTTCTACCTTATGAAGT TTATAGGGGTTGCCTCAAATTGGACGGGCAAACTCTAGTTAACCTTGAAATATTTAGTAATAATGCAGATGGTGGTACACTGTTTAACTATCTCAACAGC TGCGTCATGTCATCTGGCAAGCGGCTTTTGAGGAAGTGGATCTGCCATCCATTCAAATGTGCTACAGGCATTAACAATAGGCTTGATGTGGTTGAAGTTT TAACTTCTCGTCCTGAAGTTTTGCTTATTATGTCTCAATATCTACGGAGACTGCCGGATTTGGAAAGGCTGCTTGGGCGTGTTAAGGCTAGCATTCAGGC ATCTGCCTGTCTTGCACTGCCCTTAATTGGCAAGAAAGTATTGAAACAACGTGTAGGGCTTCGGGGTGCAATTGATTTATTATCCTTAGTACAGAATGAA GAGTACCTAAATTCATCTCTGTCTAAAGTTTTTGAAATTCCTGAGCTCAAAGGTGATTCAGGCCTTGGCAAATTTCTTTCCCAATTTGAGGCAGCTGTGG ATAGTGAGTTCCCAGATTACCAGAACCATGAAGTTACGGATTCAGAGGCAGAGACGCTTACTGTACTATTCGAGGTGTTCGTGGAGAAAGCTCAAGAATG GTCAGAAGTCATTCATGCCATCAATTGCATTGATGTGCTAAGATCTTTCGCTGTGAAAGCAAGTACGTCATTTGGGGCAATGTCTCGTCCTGTAATCTTG CCTCGAACGTCAACAACGTTGGGGCAGGAGATTGGCGGGCCTGTACTTAAAATTAAAGGGCTGTGGCATCCTTTTGCCCTTGGCGAGAATGGACAACCTG TCCCAAATGATCTACACCTTGGTGAAGATTCAGATGGCTATTGTCCTCGCACTTTGCTATTGACTGGACCAAATATGGGTGGAAAATCAACACTTCTTCG TGCCACATGTCTGGCTGTGATACTGGCCCAGCTGGGCTGTTTCGTGCCGAGCGAGAAGTGTGAGCTTTCGCTGGTTGATGTAATCTTCACTCGGCTTGGT GCCACTGATCGAATCATGTCAGGGGAGAGTACATTCCTGGTGGAGTGTTCAGAAACAGCTTCCATTCTCCAGAATGCAACTCAAGATTCCTTAGTAATCC TGGACGAATTGGGTCGTGGAACCAGCACTTTCGATGGATATGCCATTGCATACGCTGTACTACGGCATCTGGTAGAGAAAGTAAACTGCAGACTGCTGTT TGCGACGCATTACCATCCGCTGACCAAGGAGTTTGCGTCTCATCCACACGTCTCCCTACAACACATGGCCTGCACATTCATATCAAACTCGGAAAGCAGC AGCAAAAACAAATGCCGTGAGCTGGTGTTCCTATACCGGCTGGCATCTGGAGCATGCCCGGCCAGCTACGGAATGCAGATAGCATTAATGGCTGGGATAG CGGAGCAGGTGGTGGAAAGAGCTTCACAGGCAGCCGGAGTGATGCATGAGTCGGTCGGGGAAAGCTTCAAGATGAGCGAGCAGAGGGCTGAGTTCTCAAC TCTACATGAAGAATGGGTGAGGAGCCTGGTGAACCTGGCTAGAGTAGAGGAGGAGAGTAAGTTTGAATTGGACAAGAATGATGTTTTTGACACATTGGCT TGCTTGTGGCACGAGCTCAGGAGTGTTGGTGGACTGATTAAATGA
AA sequence Show only first row Show all	>Lus10017724 pacid=23176305 polypeptide=Lus10017724 locus=Lus10017724.g ID=Lus10017724.BGIv1.0 annot-version=v1.0 MQTTLHSFFQKSSPAPFNRSSGNKDIAHCQSAVDDTTKEQIQETCLPSQTVSSSEEVRGTDTPPEKVPRQILPPNFSASSDSGGPSLFSSILHKFARAPS RDSLDTNQADSTSVCLTSGLAVGRGGLQKLGTIAEISRKDGSAKSIQQEFVLPSDGDDDVQGPETPGLQPLVSRFKRIHEEIPKLGDKFDCSLLDTGKRA KLLHDSTALGKNKGEVSDDLASKFEWLNPASIRDANRRKPEHPLYDKKTLYIPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYELYELDAEIGHKE LDWKITLSGVGKCRQVGISEFGIDDAIEKLVARGFKVGRVEQLETADQAKARGGSSVITRKLVQVLTPSTTTDGIIGPDAVHLLALKEGNNGMESGGTNY GFAFVDCAALRFWIGSIRDDASCSALGALLMQISPKEVIYESRGEAGFFMLDVTGNFKKIGAIGIGYMLGLSKEAQKALRNFSLAGSAAPQLTPVLPPAD FEDASEVRNLIQLKGYFSGSSSPLNNALDSLFHKDLALSALGGLTGHLSRLMLDDVLRNGDVLPYEVYRGCLKLDGQTLVNLEIFSNNADGGTLFNYLNS CVMSSGKRLLRKWICHPFKCATGINNRLDVVEVLTSRPEVLLIMSQYLRRLPDLERLLGRVKASIQASACLALPLIGKKVLKQRVGLRGAIDLLSLVQNE EYLNSSLSKVFEIPELKGDSGLGKFLSQFEAAVDSEFPDYQNHEVTDSEAETLTVLFEVFVEKAQEWSEVIHAINCIDVLRSFAVKASTSFGAMSRPVIL PRTSTTLGQEIGGPVLKIKGLWHPFALGENGQPVPNDLHLGEDSDGYCPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPSEKCELSLVDVIFTRLG ATDRIMSGESTFLVECSETASILQNATQDSLVILDELGRGTSTFDGYAIAYAVLRHLVEKVNCRLLFATHYHPLTKEFASHPHVSLQHMACTFISNSESS SKNKCRELVFLYRLASGACPASYGMQIALMAGIAEQVVERASQAAGVMHESVGESFKMSEQRAEFSTLHEEWVRSLVNLARVEEESKFELDKNDVFDTLA CLWHELRSVGGLIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	0	1
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	2.4	0.9347
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	5.7	0.9280
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10020573 [exp]	11.0	0.9185
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	11.2	0.9160
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	12.0	0.9075
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	14.0	0.9212
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	14.0	0.9164
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	15.9	0.9028
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	20.3	0.9066
AT1G63810			unknown protein		Lus10026014 [exp]	23.0	0.9032

Compare expression of checked genes

Lus10017724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.