Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 226 / 5e-71 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT5G05550 75 / 4e-15 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G14180 74 / 3e-14 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G10030 71 / 3e-13 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G58630 70 / 4e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24860 65 / 1e-11 Trihelix Homeodomain-like superfamily protein (.1) AT3G54390 64 / 4e-11 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 59 / 1e-09 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT2G44730 56 / 2e-08 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G11100 53 / 1e-07 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033094 [exp] 594 / 0 AT3G24490 238 / 6e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 276 / 4e-89 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025772 [exp] 206 / 8e-63 AT3G24490 223 / 3e-70 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10035893 [exp] 197 / 3e-59 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10015282 [exp] 72 / 1e-14 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 74 / 2e-14 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 73 / 5e-14 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 70 / 3e-13 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10028985 [exp] 54 / 7e-09 AT5G05550 95 / 1e-24 sequence-specific DNA binding transcription factors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075500 [exp] 310 / 1e-103 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G179800 [exp] 211 / 1e-64 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 195 / 4e-58 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G071300 [exp] 89 / 6e-20 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G113600 [exp] 70 / 3e-13 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 69 / 5e-13 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 61 / 7e-10 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 59 / 3e-09 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.006G117300 [exp] 59 / 4e-09 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.001G028400 [exp] 57 / 8e-09 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017725 pacid=23176315 polypeptide=Lus10017725 locus=Lus10017725.g ID=Lus10017725.BGIv1.0 annot-version=v1.0 ATGGACCATACGGAAGACGATGGCAGGTACCCACATAAAGCTTACCCGCACAATCGCACAACAAAGAAGTCGTCGATGTACTCCCACCGTCCCGTTTCCT CTTTCTACAACCGCCACGACTACGCCGGTAACGATGACCCAGAAGAAGACGAGGAGGACGATTTCGATGACAACGGCATGGAGTCCGACGATAACAACGA CATCGGCAGAGGGTACCCTAACGATTTCGAAGAGAAGGACGGATTCGGTAGGTACCCTAAGAGGCAGAAGAAGGTCAAGAATTCGGTTTCCAACAATTAC GAATTGGTGCCTCGATCCAGGATGGCTAGCCATAATAATCACGGGGAATCGGATTTCCCAGGGGAGTGGAGTGAGCAGGAGAAGTTCGTTCTTTTGGAGG TTTGGGGGGAGAGGTTTTTGCAATTGGGGAGGAACAGCTTGAGGTCTGTGGATTGGGTGGAGGTTGCTGAGAAAGTTTCCGAGGAATTGAAAATTGAGAG GAGTGAAGCTCAATGCAGGCTGCTGATGGATTCGTTAAAGAGGAGGTACAGGAAAGAGAAGGCGAAAGGAGGGCATGTGGTTAGTAAATGGGCGTTTTAT AGGAAGATGGATATGTTGATGAGGCAAGAGAATGGGAGTGTTGGGAGTAGTAGTGGTGGCTTTAGTTTATCTTGCGGTGTGGATTCAGGAGAGTATGTGT TTATGGATACAGGAGTGTATTTGGAACGTGCCAATGGGTTCGATGAGATGAGAGATAGTCCTTGCGAGTCTGAGGAAGATGATGATGATGAAGAAGATGA TGATAAGGGGGAGGTGAGCGGTGATATGTTCAAGGGGTTGACTGTGTTGGCTGACTCTGTTCATAAGTTCGGCGAGATATATGAGAAGATAGAAAGCAGT AAGAGGGATCAGATGTTGGAGTTGGAGAGAATGCGGGTTGACTTTCAGAGAGAATTGGAGCTGCAGAAGAAACAGATCTTGGAGAAAGCTCAGACTGAGA TTTCTAAGATCAGAGATGAGGATGATGGTGATGAGGAGGAGGAGGAGGATACTGATACCGACTCTGATGGGGCTGCTGATGGTGTTGACGACAATGGAGA TGGGGAAGCCATTGAAAGTGACAATGAGAGCGGTGATGATGATTTGGGAGTGAATGTCAGCGGATAA
AA sequence Show only first row Show all	>Lus10017725 pacid=23176315 polypeptide=Lus10017725 locus=Lus10017725.g ID=Lus10017725.BGIv1.0 annot-version=v1.0 MDHTEDDGRYPHKAYPHNRTTKKSSMYSHRPVSSFYNRHDYAGNDDPEEDEEDDFDDNGMESDDNNDIGRGYPNDFEEKDGFGRYPKRQKKVKNSVSNNY ELVPRSRMASHNNHGESDFPGEWSEQEKFVLLEVWGERFLQLGRNSLRSVDWVEVAEKVSEELKIERSEAQCRLLMDSLKRRYRKEKAKGGHVVSKWAFY RKMDMLMRQENGSVGSSSGGFSLSCGVDSGEYVFMDTGVYLERANGFDEMRDSPCESEEDDDDEEDDDKGEVSGDMFKGLTVLADSVHKFGEIYEKIESS KRDQMLELERMRVDFQRELELQKKQILEKAQTEISKIRDEDDGDEEEEEDTDTDSDGAADGVDDNGDGEAIESDNESGDDDLGVNVSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	0	1
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	1.0	0.9033
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	2.2	0.8711
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	3.2	0.8790
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	3.2	0.8542
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	3.3	0.8519
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10014523 [exp]	4.2	0.8400
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10017459 [exp]	5.0	0.8295
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	6.0	0.8722
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	6.0	0.8545
AT2G29590			Thioesterase superfamily prote...		Lus10018205 [exp]	7.5	0.8486

Compare expression of checked genes

Lus10017725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.