Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 576 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 571 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 558 / 0 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G62440 440 / 2e-143 LRX2 leucine-rich repeat/extensin 2 (.1) AT5G25550 425 / 6e-143 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 428 / 6e-140 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G22800 409 / 5e-136 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 405 / 1e-131 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 410 / 2e-130 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 400 / 9e-128 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037905 [exp] 441 / 1e-148 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 419 / 1e-138 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039363 [exp] 410 / 9e-135 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 397 / 1e-132 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 390 / 2e-129 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 378 / 1e-124 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 385 / 8e-124 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 385 / 1e-123 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 379 / 9e-122 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158814 [exp] 603 / 0 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 593 / 0 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 514 / 5e-176 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 481 / 4e-162 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 451 / 1e-147 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 441 / 1e-147 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083000 [exp] 424 / 9e-143 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 409 / 2e-137 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 395 / 3e-126 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 377 / 1e-124 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017727 pacid=23176340 polypeptide=Lus10017727 locus=Lus10017727.g ID=Lus10017727.BGIv1.0 annot-version=v1.0 ATGAGGAAGAAGAATACCCATCCCTTCCTTCATCTTCTTCTCATCCCCTTCATTTCTCTTTTCCTTCTTCATACCTTACCCATCATCCATGCAACCACCA CTACTACTCATCTCACCGACGTCCAGGTTTCCCTCATTACCAGGCGCCAGCTTCTCTACTACAAGGATGAATTCGGCGACCGCGGCGAAAACGTCACCGT TCCTCCAGGTTTCGTCTTCGAAAACCTCAGGCTTCGCGACGCTTACATAGCTTTGCAGGCTTGGAAGCAGGCCATTATCTCCGACCCTCTCAACATCACC GGTAGCTGGGTGGGGCCCGACGTTTGCAGCTACGAGGGTGTCTTCTGTGCTCCGGCGCCGGACAACAAGACCATCAGAACCGTCGCCGGCATTGACCTCA ACCACGCCGACATCGCCGGCTACTTGCCTGAGGAGCTGGGTTTGTTGGTAGATCTGGCTTTCATCCATATCAATTCAAATCGCTTCTGCGGCACTGTTCC TCACAAGTTTAAGAAACTGAAGCGGCTCTACGAATTGGATCTCAGCAACAATCGATTCGCTGGGAAATTCCCAAATGTGACCCTCCAAATGCCCAAGCTC AAGTTCTTGGATCTTAGGTTCAACGAATTCGAAGGAACTGTCCCCAAGGAGCTGTTCGATAAGGATTTGGATGCTATTTTCATCAATCACAATCGATTCC ATTTCGAGCTCCCTGATAATTTCGGAAACTCTCCTGTTTCTGTGATTGTGCTGGCCAATAACAATTTCCATGGATGTGTACCTTCCAGCTTGGGGAACAT GTCCAATCTCAACGAGATTATAATGATGAACAATGGGTTCATGTCTTGTTTGCCGCCGGAGATTGGACGGCTAAGCAACGTCACGGTGTTTGATGTCAGC TTTAACCGGCTGGTGGGTCCTTTGCCGGACACGATCGGAGGGATGGTGAGCTTGGAGCAGTTGAACGTGGCTCACAATATGTTGTCGGGAGCAATTCCGC CGGCTATTTGTCAGCTTCCAAGGCTGCAGAATTTTACTTATTCGGATAACTTCTTCACGGGAGAGCCGCCCAAGTGTTTGGCGTTACCGGCGTTTGATGA TAAGAGGAATTGTTTGGCGAATCGGCCGGTGCAGAGATCTCCCGGACAATGCCAATTGTTCTTGTCCAAGCCTATCAGGTGCAGTGCTTTCAAATGTGCT CCGTTTGTTCCACCTTCCCCTCCCCCGGTTTACTTGCCCCCGCCGTCACCACCACCTCCAGTTTACTCACCTCCACCTCCACCAGTTTACTTACCTCCTC AATCTCCCCCGCCGCCAGTTTACTCTCCTCCTCCACCATCGCCTCCGCCACCTCCAGTTTACTCACCTCCTCCACCTGTTTACTCACCGCCTCCACCTGT TTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCA CCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGC CTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCGCCTCCACCTGTTTACTCACCTCCTCCACCCCCACCGCC TTTTTACTCACCTCCCCCACCCCCACCACCACCATCAGCTTCGCCTCCGCCACCAAATTCCCCTCCACCTCCATCTCCTCCTCCTCCTACTTACCCCTAC CTATCTCCGCCTCCTCCCTCACCTCCAGTCTACTTACCCCCTCCACCACCGCCATCTTCACCGCCTCCTCCACCTCCATGTATAGAACCACCACCACCTC CGCCGCCCTGTGTAGAAAACCCTCCTCCACCGACAGTAGCACCCTACAAACCACCACCATCTCCATCACCACCACCACCACCACCGATCTCCCATCCATC CCCACCACCACCAATATTTTACCCATCGCCTCCGCCGCCTTCACATTCACCACCGCCACCAATCATCTACAAAAGTCCGCCTCCTCCGCCGCCAGAATAT ATGGGGCCATTGCCGCCAGTGACAGGAATCCCATACTCTTCACCTCCACCACCACCTTACTATTAA
AA sequence Show only first row Show all	>Lus10017727 pacid=23176340 polypeptide=Lus10017727 locus=Lus10017727.g ID=Lus10017727.BGIv1.0 annot-version=v1.0 MRKKNTHPFLHLLLIPFISLFLLHTLPIIHATTTTTHLTDVQVSLITRRQLLYYKDEFGDRGENVTVPPGFVFENLRLRDAYIALQAWKQAIISDPLNIT GSWVGPDVCSYEGVFCAPAPDNKTIRTVAGIDLNHADIAGYLPEELGLLVDLAFIHINSNRFCGTVPHKFKKLKRLYELDLSNNRFAGKFPNVTLQMPKL KFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFHFELPDNFGNSPVSVIVLANNNFHGCVPSSLGNMSNLNEIIMMNNGFMSCLPPEIGRLSNVTVFDVS FNRLVGPLPDTIGGMVSLEQLNVAHNMLSGAIPPAICQLPRLQNFTYSDNFFTGEPPKCLALPAFDDKRNCLANRPVQRSPGQCQLFLSKPIRCSAFKCA PFVPPSPPPVYLPPPSPPPPVYSPPPPPVYLPPQSPPPPVYSPPPPSPPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPP PVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPPPPFYSPPPPPPPPSASPPPPNSPPPPSPPPPTYPY LSPPPPSPPVYLPPPPPPSSPPPPPPCIEPPPPPPPCVENPPPPTVAPYKPPPSPSPPPPPPISHPSPPPPIFYPSPPPPSHSPPPPIIYKSPPPPPPEY MGPLPPVTGIPYSSPPPPPYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	0	1
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	1.4	0.9447
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	3.2	0.9444
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	6.2	0.9393
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	6.6	0.9313
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	6.7	0.9284
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10023328 [exp]	7.1	0.8850
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	8.1	0.9237
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	8.5	0.9280
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	9.0	0.9249
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	9.5	0.9260

Compare expression of checked genes

Lus10017727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.