Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24460 575 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 556 / 0 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT2G33205 330 / 1e-109 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G06170 189 / 2e-55 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 157 / 3e-43 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033091 [exp] 742 / 0 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 277 / 1e-89 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 278 / 2e-89 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10034023 [exp] 197 / 1e-58 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 195 / 2e-57 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10026111 [exp] 159 / 5e-44 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10008709 [exp] 158 / 1e-43 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076000 [exp] 620 / 0 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 345 / 1e-115 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.008G201900 [exp] 186 / 3e-54 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 171 / 8e-49 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 160 / 1e-44 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10017728 pacid=23176344 polypeptide=Lus10017728 locus=Lus10017728.g ID=Lus10017728.BGIv1.0 annot-version=v1.0 ATGGAGGAGGATGCAGGTGGTGGTGCCGCCGCCGGATGCGGAAGCAGCAGAACAGAGAGGAACAATGCGGTGTTGAAGGACCCGTCGTGGTTCGGTCAGT TCAGAAATGGGTCGAACCCATGGATGGCTAGATACCTCTACGCTCTCATATTCCTATCGGCGAATCTACTAGCCTGGGCAGCTCGTGACTATGGGCGACC AGCATTGACGGAGATGTACAGGCTGAAAGTGTGTGATGGGAAATCAGAGTGTTTGGGAGCAGAAGGGGTGCTGAGGGTGAGCTTGGGTTGTTTCTTGTTC TTCATTCTGATGTTTCTATTGACTGTTGGGACATCGAAGCTTGAGGATCCGAGGGATGCATGGCATTCTGGTTGGTGGACTGCTAAGTTAGCGATGTGGG TTGGACTCACAATGCTCTCTTTCCTTCTCCCTTCCACCCTTGTCAAGATCTATGGCGAGATTGCTCATTTTGGTGCTGGGGTGTTTCTACTAATTCAGCT GGTGAGTGTGATCAGCTTCATAACTTGGGTCAACGATTGCTGCCTATCTGAGAAAAACGCTGAAAGATGCCATATTCATGTGATGGTAGTGGCGACAGCT TCGTATGTGTTATGTTTGTTTGGGATGATAATGATGTACATTTGGTACACGCCTGACCCATCTTGCCTCCTCAACATTTTCTTCATTACATGGACTTTAG TGCTTCTCCAACTCATGACCAGTGTCTCTCTTCACCCTAAAATAAATGCTGGTTTCTTGGCACCAGGACTGATGGGGCTTTATGTTGTGTTCCTTTGTTG TGAACCGGCAGGAGAGATTTGTAACAGGAAGGCAGAGGCTTCCAAGAGAACAGATTGGCTCACCATCATAAGCTTTGTCATCGGACTACTTGCAATAGTC ATTGCTACATTTTCAACAGGAATCGACTCGAAATGCTTCCAGGTCCTTGTTCTTATTCTCCCTTCAACAAACTTGGTTGTTGTTATTATGTTTGGTGTTG TTGACACAAAGAAGAAGTTGCAGATAAGGAAAAGAGAGAGTCAGCAAGGTGATGAAGAAGATCATGTACCGTACGGATACGGATTCTTTCACTTTGTGTT TGCGACGGGAGCTATGTACTTCGCCATGCTGTTAATTGGCTGGAACACCCACCACAAGATTAAGAAGTGGACGATTGACGTGGGATGGACAAGTGCCTGG GTCAGAGTCGTTAATGAATGGCTGGCAGTTTGCGTATACGTATGGATGCTAGTGGCTCCATTGATACTCAAGTGCGCAAAACATCATCAATCAGCAGCAG CAGCAGTTTAA
AA sequence Show only first row Show all	>Lus10017728 pacid=23176344 polypeptide=Lus10017728 locus=Lus10017728.g ID=Lus10017728.BGIv1.0 annot-version=v1.0 MEEDAGGGAAAGCGSSRTERNNAVLKDPSWFGQFRNGSNPWMARYLYALIFLSANLLAWAARDYGRPALTEMYRLKVCDGKSECLGAEGVLRVSLGCFLF FILMFLLTVGTSKLEDPRDAWHSGWWTAKLAMWVGLTMLSFLLPSTLVKIYGEIAHFGAGVFLLIQLVSVISFITWVNDCCLSEKNAERCHIHVMVVATA SYVLCLFGMIMMYIWYTPDPSCLLNIFFITWTLVLLQLMTSVSLHPKINAGFLAPGLMGLYVVFLCCEPAGEICNRKAEASKRTDWLTIISFVIGLLAIV IATFSTGIDSKCFQVLVLILPSTNLVVVIMFGVVDTKKKLQIRKRESQQGDEEDHVPYGYGFFHFVFATGAMYFAMLLIGWNTHHKIKKWTIDVGWTSAW VRVVNEWLAVCVYVWMLVAPLILKCAKHHQSAAAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24460			Serinc-domain containing serin...		Lus10017728 [exp]	0	1
AT1G31460			unknown protein		Lus10033293 [exp]	8.7	0.7887
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	8.9	0.8147
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	14.2	0.8481
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	17.9	0.8277
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10030962 [exp]	18.7	0.8121
AT1G72790			hydroxyproline-rich glycoprote...		Lus10006024 [exp]	21.9	0.8295
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	24.3	0.8337
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	29.5	0.7682
AT3G54000			unknown protein		Lus10017206 [exp]	30.6	0.7886
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10013159 [exp]	31.5	0.7834

Compare expression of checked genes

Lus10017728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.