Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13350 434 / 1e-144 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT4G32630 228 / 2e-65 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT1G08680 223 / 4e-64 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT5G54310 76 / 3e-14 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 69 / 7e-13 AGD15 ARF-GAP domain 15 (.1) AT4G05330 64 / 1e-10 AGD13 ARF-GAP domain 13 (.1) AT4G21160 59 / 3e-09 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G53710 60 / 4e-09 AGD6 ARF-GAP domain 6 (.1.2) AT3G07940 59 / 5e-09 Calcium-dependent ARF-type GTPase activating protein family (.1) AT2G37550 57 / 2e-08 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033090 [exp] 1066 / 0 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10022113 [exp] 260 / 9e-76 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10020306 [exp] 246 / 6e-73 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10005686 [exp] 246 / 5e-72 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10038582 [exp] 79 / 3e-15 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 77 / 3e-15 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 77 / 2e-14 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 76 / 2e-14 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10002760 [exp] 59 / 1e-08 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076200 [exp] 692 / 0 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.018G035000 [exp] 323 / 2e-99 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.006G246100 [exp] 315 / 1e-96 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.013G068300 [exp] 273 / 1e-81 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.011G044100 [exp] 83 / 2e-16 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 83 / 2e-16 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 81 / 1e-15 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 72 / 9e-14 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 73 / 3e-13 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 59 / 3e-09 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10017729 pacid=23176321 polypeptide=Lus10017729 locus=Lus10017729.g ID=Lus10017729.BGIv1.0 annot-version=v1.0 ATGGCGAGTCGAGTTAGAGAGGACGAGAAAAATGAGCGAGCAATCCGGGGACTTCTGAAGCTTCCAGATAACCGGAGATGCATCAACTGTAATAGCTTGG GACCACAATATGTCTGCACAAATTTCTGGACATTCGTCTGCACTACCTGTAGTGGAATACATCGGGAATTCACACACAGAGTTAAATCAATATCAATGGC TAAATTTACCTCCCAAGAAGTTGCTGCACTTCAGGAAGGCGGAAACAAGCGCGCAAGAGAAGTTCTTCTAAAAGACTGGGATCTTCAGCGTAATTCTACA CCTGACAGCAGTAATGTGGATAGACTTCGGGACTTTATTAAACATGTGTATGTTGATAAAAGATACACGGGTGATAAGAATTTTGGCAAGCCCCCAAATA TGAAGACCGGTGAAAAAGAAGATCTATTTGAGAATAGAAGAACCGACACATTCCAAGGAGGCTCTCGGAGTCCGCCATATGAGGATGTCTATGAACGACG TTTCAATCAAACGTCTAGTCCTGGTGGAAGAAGCGATGATAAAAATAGCAGATACGATGAGAGGCGAAGCCCTGGATATGATCAAGAAGGTCGACAGTAC AATGATTACAAGAGAAGTCCAGCTCGGCCTGAGATTATCAATGATTGGCGTCGGGAGGATAGATTTGGAAATGGGAGGAAAGGAGAGGACTGTAGAGTAT CCGATGGAGATTCAACACCAGGAGGCAGGTCACCTGATCGGCCAAATGATATTGGAGCATATAGCCCCCCTGTGGTTCGGCCTGTTCGAGAAATTCTGGG AGATAACGTAGTGCCTCTTCGTATAAGTGAACCACCAAAAGCGAATGCAGTAAGGCCTGCTGATGGTTTTGTGGCAACACAGAGGACTGCATCGTCAAGC AGCCTGGGCTCTATAAATGAGAACCCAACGGAAGTGAAAATTGAACCAGTTGGAAGCTTAATCGATTTTGATTCTGACCCTGTACCCGCTGTTGCTTTGG CTGTCCCGCAAGCACAACCAGCAACTGCAACTGCTACTCAGCCTGCTACAGAGACCGTAGCAACCAGCAATGACAATAACTGGGCCTCTTTTGATTTTGC GCCTCCGGTTAAAGCTTCTCAAGCTCCTGCAAGTGCAGCTAATCCATTGGATTCTGTTTTGTCCCAGTTGTCAGCTACACCATCAGCATCCGGTTCCACT CAAAGTATTCTGAATGGTTCTGGTACTTTACCAGCACCAGTTGCATCTGCATTTCCATATAATCCTAATGCCTCTGCTCCTGGAGGACAGCAATGGGCGC AGACGCAGCATCAACAAGCTTCTTTTTTCCCTAATTCTGGTGTTCAATCCACCAATCAACAAGTTTCAGCCCCTAGCAATCAGCCTTGGAATTCTTCTCT ACCCCCTAATGTGCAAGCAGCTTTGGGTACAAATCCTGGGGCAGGAACTATCTCAGGTCCTGCAACAACACAACCTTCAACAGCCACTGGAAGAAACGAA CTACCTGCTGGGTGGCAAACAGGCCAACCCAACGGTATGATGTATTATCCTATGCAGTATGCTAATGTGCAAGCTCCTATGCAGTATGCTAACGTCCCAG CTCCTATGCAATATAACAGTGTTACTGTGCCTACACCCGCATTTAACCAGCACTCAAAATCAGCCAATCCATTTGATGTGAATGAGCCAACTCCAGCTCC TGTCCAGCATTTTCCAAACATGTCATCTTTGCAAAGTGCTTTGCCGAATATATCGTCACATTCAGGAATACAACGTGCTTCAAGTCTTGGTAACCCTGCA CAAGCATGGATGCCAAACCAGCCACCATCATATCCATCAGGGTTGCATCCTCAGCTACAATCTTACGCAACTACCGCTCCCCCAAGGCCAACTACGTCTC AAGTACCGAGTCACATGCCATTGCCAGGGCACCGAGGAGTAGCAAGCTTCAGTAATGATGAAGGCACCTTTGGTGCCATACATTTGGACCAGTCGTTGAC TGATGGATTCTCCGTGCCTGCTACAGTGCAGTCGTTCCCTTCGACCGGTGGAAACCCTTTCGGATGA
AA sequence Show only first row Show all	>Lus10017729 pacid=23176321 polypeptide=Lus10017729 locus=Lus10017729.g ID=Lus10017729.BGIv1.0 annot-version=v1.0 MASRVREDEKNERAIRGLLKLPDNRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSISMAKFTSQEVAALQEGGNKRAREVLLKDWDLQRNST PDSSNVDRLRDFIKHVYVDKRYTGDKNFGKPPNMKTGEKEDLFENRRTDTFQGGSRSPPYEDVYERRFNQTSSPGGRSDDKNSRYDERRSPGYDQEGRQY NDYKRSPARPEIINDWRREDRFGNGRKGEDCRVSDGDSTPGGRSPDRPNDIGAYSPPVVRPVREILGDNVVPLRISEPPKANAVRPADGFVATQRTASSS SLGSINENPTEVKIEPVGSLIDFDSDPVPAVALAVPQAQPATATATQPATETVATSNDNNWASFDFAPPVKASQAPASAANPLDSVLSQLSATPSASGST QSILNGSGTLPAPVASAFPYNPNASAPGGQQWAQTQHQQASFFPNSGVQSTNQQVSAPSNQPWNSSLPPNVQAALGTNPGAGTISGPATTQPSTATGRNE LPAGWQTGQPNGMMYYPMQYANVQAPMQYANVPAPMQYNSVTVPTPAFNQHSKSANPFDVNEPTPAPVQHFPNMSSLQSALPNISSHSGIQRASSLGNPA QAWMPNQPPSYPSGLHPQLQSYATTAPPRPTTSQVPSHMPLPGHRGVASFSNDEGTFGAIHLDQSLTDGFSVPATVQSFPSTGGNPFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10017729 [exp]	0	1
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	1.0	0.8671
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	2.4	0.8371
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	8.7	0.7999
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	13.8	0.7502
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	15.8	0.8379
AT3G28430			unknown protein		Lus10011235 [exp]	27.9	0.7997
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10000941 [exp]	33.1	0.7738
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	36.4	0.7742
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	36.6	0.7625
AT3G17900			unknown protein		Lus10037215 [exp]	42.2	0.7853

Compare expression of checked genes

Lus10017729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.