Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022112 [exp] 162 / 5e-52 ND / Lus10011706 [exp] 104 / 3e-29 ND / Lus10006889 [exp] 95 / 9e-26 ND / Lus10014515 [exp] 52 / 5e-09 ND / Lus10004128 [exp] 49 / 7e-08 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10006124 [exp] 46 / 1e-06 AT3G22520 340 / 4e-106 unknown protein Lus10024590 [exp] 39 / 0.0003 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10029230 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119300 [exp] 74 / 2e-16 AT4G15180 2427 / 0.0 SET domain protein 2 (.1) Potri.017G041100 [exp] 64 / 5e-13 AT4G15180 2386 / 0.0 SET domain protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017731 pacid=23176347 polypeptide=Lus10017731 locus=Lus10017731.g ID=Lus10017731.BGIv1.0 annot-version=v1.0 ATGGTTACAGCGTGTTCTCTGAAATTGCCGGAGAAAGTTACAGGGGCCGAACACGACCAGGAACATGGCCATGTTCATGGAACACGGCGTGTTCCATATG GAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCC ATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATGGAGCACGCCGTGTTCCATATACACATATTTTC GAGCTCTTGGAGAGAGCTAGAGTTCCAAAGAGATGA
AA sequence Show only first row Show all	>Lus10017731 pacid=23176347 polypeptide=Lus10017731 locus=Lus10017731.g ID=Lus10017731.BGIv1.0 annot-version=v1.0 MVTACSLKLPEKVTGAEHDQEHGHVHGTRRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYGARRVPYTHIF ELLERARVPKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017731 [exp]	0	1

Compare expression of checked genes

Lus10017731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.