Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24420 269 / 3e-90 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 219 / 9e-71 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 199 / 5e-63 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 56 / 7e-09 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G80280 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033087 [exp] 508 / 0 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 221 / 2e-71 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 220 / 5e-71 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 214 / 1e-68 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 199 / 1e-62 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 193 / 2e-60 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 187 / 5e-58 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 166 / 5e-50 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10007737 [exp] 123 / 6e-33 AT3G03990 227 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155500 [exp] 332 / 7e-115 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 243 / 6e-80 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 215 / 3e-69 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 206 / 2e-65 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 205 / 4e-65 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 201 / 2e-63 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 48 / 3e-06 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G235200 [exp] 44 / 6e-05 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 42 / 0.0004 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10017735 pacid=23176334 polypeptide=Lus10017735 locus=Lus10017735.g ID=Lus10017735.BGIv1.0 annot-version=v1.0 ATGGTGATGCAACAAACCAGCCTGAAAGAAGCCATGAACGCTAGAACTATGGTGGGATCGCCCAACACTACTTGGGGCGAAACCATGGTTTTAGCACACG GCTATGGTGGGGACCAGTCGGCTTGGGACGACATCCTCCCGGGACTTACATGCCACTGCCGCCAGGTGGTGACCTTTGACTGGTGCTTCTCGGGCGCCGT CAAGGAACCGAACAACAAATTGTTCGACCAGGACAAGTACTCGACTTACGAGGCGTTTGCGGATGACCTGATCGGGCTGATGGAGGAGATGGAGCTGGAA TCGGTGGTGTTCTTGGGCCACTCCATGTCCGGAATGATCGGATGCATTGCTTCCATTAAACGCCCGGAGCTCTTCAAGCGCTTAGTCCTCGTCGGAGCTT CTCCCAGATACATAAACGCGGAAGATTACGAAGGAGGTTTCGAGCGCTCCCACATCGAAGACCTAATGACCAACATAGAAACCAACTTCTCCAACTGGGC ACCAGCCTTCGCCGCTATGGTCGTCGGCAGCGGCGGCGACGACCCTTCCGCCGTCCACAAATTCGCCAACTCATTGAAGAGAATGAAACCCGAGGTGGCT CTCTCCGTCGCCAAAACAGTCTTCTACGGAGACTACAGGGGAGTGCTCTGTAAAGTCACTACTCCGACCACCATCGTCCAGACCACGCACGACGCTGCCG TCCCGACCTCGGTGGCGTACTACATGCAGGAGAGGATCAAGGGGAAATCGACGGTGGAGATCATTGACACGGACGGTCACTTCCCGCATCTGACGGCCCG TGATCAGCTGCTTGGTTTGCTTGCTGGACTCCTCGCGTTTGCAGCTTCATCGATCCATTATTATTAG
AA sequence Show only first row Show all	>Lus10017735 pacid=23176334 polypeptide=Lus10017735 locus=Lus10017735.g ID=Lus10017735.BGIv1.0 annot-version=v1.0 MVMQQTSLKEAMNARTMVGSPNTTWGETMVLAHGYGGDQSAWDDILPGLTCHCRQVVTFDWCFSGAVKEPNNKLFDQDKYSTYEAFADDLIGLMEEMELE SVVFLGHSMSGMIGCIASIKRPELFKRLVLVGASPRYINAEDYEGGFERSHIEDLMTNIETNFSNWAPAFAAMVVGSGGDDPSAVHKFANSLKRMKPEVA LSVAKTVFYGDYRGVLCKVTTPTTIVQTTHDAAVPTSVAYYMQERIKGKSTVEIIDTDGHFPHLTARDQLLGLLAGLLAFAASSIHYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	3.6	0.9531
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032216 [exp]	4.5	0.9394
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	4.7	0.9392
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	4.9	0.9500
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	5.3	0.9521
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	5.5	0.9517
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	6.3	0.9427
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	6.5	0.9448
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	7.1	0.9492
					Lus10016041 [exp]	7.1	0.9304

Compare expression of checked genes

Lus10017735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.