Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19460 421 / 2e-146 ATNUDT20 nudix hydrolase homolog 20 (.1) AT5G19470 394 / 4e-136 ATNUDT24 nudix hydrolase homolog 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033086 [exp] 625 / 0 AT5G19460 392 / 2e-135 nudix hydrolase homolog 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157700 [exp] 451 / 1e-158 AT5G19460 426 / 3e-149 nudix hydrolase homolog 20 (.1) Potri.006G157800 [exp] 444 / 8e-156 AT5G19460 419 / 3e-146 nudix hydrolase homolog 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10017736 pacid=23176309 polypeptide=Lus10017736 locus=Lus10017736.g ID=Lus10017736.BGIv1.0 annot-version=v1.0 ATGGCTTACGGCGTTATATTTTCAGTTCCGATTCCCAGATTCCCTCCCCGCATCCATCCAGCTCGATCCCTCCCGGACTCCCCCTTTTCCATGGCCGTTA TTTCTCATTACCCGCCTACCAGATTCCGCTTGCCCTGCTATCCATCTCTTCGCCCGACGGCAACTTTCCAACGACGGATCAGCATCCAAACCCTGCCAGC GGCTTTTGCTCTCCGGGCTTCCACTTCCCAATCGAATTCCTCAGCTCCTCTCTCAGTTTCAGCTTTAGAGAGCAGCTGCAGCTTCACTTGGGATGACGCC CTCCGAATCTCTCAACCCAATTATAACAATACCCCTTGCGATTCCTTCGAGCTCTCCGGATTCTTCGATAAAATCAACGCCTGCAATCGCGGCTCCGAAC TGCGAAGCAAATTCGTTCCGTTCGTGATCGAGGAGAAAACAGTCGGATACATCCATAACGGATTTATTGAACATTTGAAGCGATTCGAGGAAGTGTTCGT GATCCACAAAAGCATTTCTCGTGGTGGCCGATTTGGGTATTACGTGACTTTACACAACAAGCTAGTGACGGCTGAAGAGAGGACTGCAGCCGTTGGAGAA GTCATCAAATGTCTGGGAGAGGATGAACAGCTAATTCCAGGTATACGAAATGAGCTGTACCCGGTGACTTCATCTTTTGGTGGGCAAGTGTATTTCTCCT TGGAGCGTGCTGCAGCTCCTTATTTTGGGATAAAGGCCTATGGCATACATATGAATGGCTTTGTGGAAACGGGTGATGAGAAATTGCTATGGGTAGCAAA GAGAAGTCAAGGGAAACCTACTTTCCCCGGGATGCTTGATCATATAGTTGCTGGAGGATTGCCTCACGGGGTGTCTTGTCAAGAGAATGTTATTAAGGAA TGCGAAGAAGAAGCTGGAATACCTCAATCCATGTCCTCCAAGGCTCTACCGGTTGGCGTTGTTTCCTACGTAGACATCGATGGTGATAGATTCAAGAGAG ATGTTCTCTTTTGCTACGACTTGGAGCTGCCTGAAAGTTTTGTACCAGAGAATCAAGATGGAGAAGTTGAAGACTTCAGGTTGATACCAATGCGTAATGT TACTAATATAGTGAGGAGGACGCATTTTTACAAGCCGAACTGCTCCCTAGTCATCATCGATTTCCTATTCCGACATGGGTACATCCGCCCAGAGAGCTTA GGATACTTGGACCTATTGCAGAGTTTGAGGAGCAGTGATTGCTCGTAG
AA sequence Show only first row Show all	>Lus10017736 pacid=23176309 polypeptide=Lus10017736 locus=Lus10017736.g ID=Lus10017736.BGIv1.0 annot-version=v1.0 MAYGVIFSVPIPRFPPRIHPARSLPDSPFSMAVISHYPPTRFRLPCYPSLRPTATFQRRISIQTLPAAFALRASTSQSNSSAPLSVSALESSCSFTWDDA LRISQPNYNNTPCDSFELSGFFDKINACNRGSELRSKFVPFVIEEKTVGYIHNGFIEHLKRFEEVFVIHKSISRGGRFGYYVTLHNKLVTAEERTAAVGE VIKCLGEDEQLIPGIRNELYPVTSSFGGQVYFSLERAAAPYFGIKAYGIHMNGFVETGDEKLLWVAKRSQGKPTFPGMLDHIVAGGLPHGVSCQENVIKE CEEEAGIPQSMSSKALPVGVVSYVDIDGDRFKRDVLFCYDLELPESFVPENQDGEVEDFRLIPMRNVTNIVRRTHFYKPNCSLVIIDFLFRHGYIRPESL GYLDLLQSLRSSDCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	0	1
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	3.0	0.8359
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	3.5	0.8323
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	4.0	0.8337
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	6.3	0.8224
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	6.3	0.8240
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	11.0	0.8139
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	13.0	0.8194
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	15.2	0.7953
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	15.3	0.7891
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	23.4	0.8055

Compare expression of checked genes

Lus10017736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.