Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13400 546 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G63290 78 / 1e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033085 [exp] 723 / 0 AT4G13400 560 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004080 [exp] 85 / 9e-18 AT3G63290 374 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10014705 [exp] 63 / 7e-11 AT3G63290 275 / 1e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076700 [exp] 568 / 0 AT4G13400 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G049300 [exp] 87 / 2e-18 AT3G63290 387 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017737 pacid=23176327 polypeptide=Lus10017737 locus=Lus10017737.g ID=Lus10017737.BGIv1.0 annot-version=v1.0 ATGACCTGCTCGTCCGCGGATTCTTCTTTTCCTACTCTCAGGACTGTCACCATACCTTACTCGGAACTCAAGGAGAAGAATATAGATTTATCGAATAAGA TAGAGGAGGGTTTCGGACCAAACGGGTTGGGAATTCTGTCAATTACAGATGTCCCAGGATTTTCTTCATTGCGTCAAAATCTTCTACATCTTTCTCAAAG ACTAGCCAGTCTTCCCGATGAAATAAAGAAGGAACTTGAAGATCCAAGTACAAGGTACAACTTTGGGTGGAGTCATGGAAAAGAGAAGCTTGAATCAGGA AAGCCTGATGTATTAAAAGGCTCTTATTATGCAAATCCGATGCTCGATGTGCCCACAACTGATGAACATCTGATACAGCGGTATCCGTCGTATTGTGGAT CTAATATATGGCCCAATAGTGCACTGCCTGAACTGGAAGTTGCTTTTATTCAGTATTTTCATCTAGCGCTTTTGCCGTGTCTGAAGTCTGAACGACCATT TCTTGACACAGCTTTCAAAACGCTTGGGAAGCTCATCCTTGATGTTGGATTAATGGTGGCTTATCATTGTGATCGATACGTTTCAAAAGGAATGAACCCT GATGAAGATGGTGACCTCGAAAAGATACTTAGCTGCTCTCGCTGCCACAAAGGCCGGTTACTTTACTACTTTCCTGCTCATCAAAATGATGGTTCAAAAG ATACCGACTCCATGTCCTCGTGGTGTGGTTGGCATACAGATCATGGTTCTCTGACAGGTCTGACCTGTGCTCTGTTTAAGAGAGACGGTGTAGAAATACC TTGCCCTGATAGTGCTGCTGGTCTTTATATTAGAACACGAACAGATCAAATTGTGAAAGTTGTATATGGAGAAGATGAAATAGCATATCAAGTTGGAGAA ACCACTGAAATTCTCTCGGGAGGCTATCTATGTGCAACACCTCACTGTGTCCGGGCACCTAAAGGAGTGGTGGCTTCTAATGTTGACCGATCGACCTTTG CTTTATTCATGCAGCCTGACTGGGATCAAAAGCTGAATTTTCCCGAGAAGGTGCGACTTCACGAAGAGCTGAAGCTGGGGAACACTAGTCTTACCTTTGG AGAATATACAGAGAAGCTATTGGAGAAGTACTACCACTCTAGGTCTTAG
AA sequence Show only first row Show all	>Lus10017737 pacid=23176327 polypeptide=Lus10017737 locus=Lus10017737.g ID=Lus10017737.BGIv1.0 annot-version=v1.0 MTCSSADSSFPTLRTVTIPYSELKEKNIDLSNKIEEGFGPNGLGILSITDVPGFSSLRQNLLHLSQRLASLPDEIKKELEDPSTRYNFGWSHGKEKLESG KPDVLKGSYYANPMLDVPTTDEHLIQRYPSYCGSNIWPNSALPELEVAFIQYFHLALLPCLKSERPFLDTAFKTLGKLILDVGLMVAYHCDRYVSKGMNP DEDGDLEKILSCSRCHKGRLLYYFPAHQNDGSKDTDSMSSWCGWHTDHGSLTGLTCALFKRDGVEIPCPDSAAGLYIRTRTDQIVKVVYGEDEIAYQVGE TTEILSGGYLCATPHCVRAPKGVVASNVDRSTFALFMQPDWDQKLNFPEKVRLHEELKLGNTSLTFGEYTEKLLEKYYHSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10017737 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	3.2	0.9381
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	12.7	0.9373
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	12.8	0.9365
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	17.0	0.9228
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	21.9	0.9298
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	24.4	0.9332
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	24.7	0.9328
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	25.1	0.9337
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	25.6	0.9331
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	26.7	0.9286

Compare expression of checked genes

Lus10017737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.