Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32610 49 / 3e-06 copper ion binding (.1) AT2G25670 45 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033084 [exp] 146 / 6e-41 AT2G25670 87 / 2e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246300 [exp] 58 / 4e-09 AT4G32610 81 / 5e-17 copper ion binding (.1) Potri.018G034800 [exp] 55 / 3e-08 AT2G25670 112 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017738 pacid=23176333 polypeptide=Lus10017738 locus=Lus10017738.g ID=Lus10017738.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGTGGCGGGAGGACGAACGAGCAGGTGGTTCTCAACAATACCAACGTGTTTGCTGCACTCGACACCTTAAGGAAGAAGAAGAAGAGTTCAT CCTCCAACTCTTCCGCCGCTAAGGGGCGAGACGGCTCTTCTAGATCGAAATCTACCAAGGATGGTAAGGAGCCCGATGATAAGGTCTTCTGGCCTAGAAG TCTGATCAACAAACCTTGGGCCGATATCGAAGACGAAGACGATGACGACTATTTGTCCACCACTGCCCCTCTAGATACGGAAGCTGCTCCTGATGCCAAG CCGGCGAAGGAGGTCGTCGAGAGGGAGTTGAGGTTTGCCGATTGTTGGCTTAGGGTTTTGGCTGTGAAATCTATCACTCTTAAATCGACACGTGCCAAAC GATCTGTTCAACAATGCATTCAATCATTATGTTGCTGTCACCTTACTTATACAAGAGCCAGATTTGCCAATGGTGGTCTTGGAACATCAGAAAGTGAAAG TGACGAAGAAGATGATGCGGATGATGATGTGGAAGATGTGGAGGAAGAAGGTGATCATGAGCCAGAAGCACCTGCTGGGGTGGAGCCTGTTAAGAAGCAG CCGGAGCCTTCTTTGGCTCCCAAGGATACAGAAAGGCAACTGTCGAAGAAGGAACTGAAGAAAAAAGGACTTGAAGAACTTGATGCGGTTCTTGCAGAGC TGGGATTAGCTAAACAGGAGTCAGGAGGTCAGGAGGCCTCTGATGGAGAGAAGAAAGCAGACAACAATGGACAAGAAAAGAAGGAGAATGCTGCTGCAGG AGAGAGCAAGAATGCCAAAAAGAAAAAGAAGAAGGAGAAGATGTCAAAGGAAGTGAAGGATTCTGAGAACCAGTCTCAAAGTGCAGCCGTGGTTGGAGAT GCTGGAGCCAACAGCACTGCTGAGACTGAGAAGTCGGATGATGCAGCTAATGTTGATGTGAAGGAGCGTTTGAAGAAAGTGGCTGGCAAGAAGAAGAAAT CAAGTAAAGAAGTTGATGCTGCTGCCAAGGCTGCTGCTAGTGAGGCTGCTGCCAGGCGTGCAAAGGTTGCTGCCGCTGCAAAGAAGAAGGAGAAGGCTCA CTACAATCAGCAGCCCGTGCGGTAA
AA sequence Show only first row Show all	>Lus10017738 pacid=23176333 polypeptide=Lus10017738 locus=Lus10017738.g ID=Lus10017738.BGIv1.0 annot-version=v1.0 MVGGGGRTNEQVVLNNTNVFAALDTLRKKKKSSSSNSSAAKGRDGSSRSKSTKDGKEPDDKVFWPRSLINKPWADIEDEDDDDYLSTTAPLDTEAAPDAK PAKEVVERELRFADCWLRVLAVKSITLKSTRAKRSVQQCIQSLCCCHLTYTRARFANGGLGTSESESDEEDDADDDVEDVEEEGDHEPEAPAGVEPVKKQ PEPSLAPKDTERQLSKKELKKKGLEELDAVLAELGLAKQESGGQEASDGEKKADNNGQEKKENAAAGESKNAKKKKKKEKMSKEVKDSENQSQSAAVVGD AGANSTAETEKSDDAANVDVKERLKKVAGKKKKSSKEVDAAAKAAASEAAARRAKVAAAAKKKEKAHYNQQPVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25670			unknown protein		Lus10017738 [exp]	0	1
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	1.0	0.9653
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	1.4	0.9566
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	2.0	0.9537
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	3.5	0.9544
AT1G30890			Integral membrane HRF1 family ...		Lus10025577 [exp]	4.9	0.9389
AT5G53800			unknown protein		Lus10014800 [exp]	5.2	0.9381
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	5.5	0.9422
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	5.5	0.9502
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	7.1	0.9337
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	7.5	0.9398

Compare expression of checked genes

Lus10017738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.