Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56120 582 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G27340 178 / 2e-49 Met-10+ like family protein (.1) AT4G04670 48 / 2e-05 Met-10+ like family protein / kelch repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033083 [exp] 909 / 0 AT3G56120 587 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037871 [exp] 183 / 5e-51 AT4G27340 733 / 0.0 Met-10+ like family protein (.1) Lus10002756 [exp] 55 / 1e-07 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072200 [exp] 629 / 0 AT3G56120 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G125700 [exp] 178 / 4e-49 AT4G27340 720 / 0.0 Met-10+ like family protein (.1) Potri.004G015200 [exp] 49 / 5e-06 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02475 [flax] [poplar] Met_10 Met-10+ like-protein
Representative CDS sequence Show only first row Show all	>Lus10017739 pacid=23176320 polypeptide=Lus10017739 locus=Lus10017739.g ID=Lus10017739.BGIv1.0 annot-version=v1.0 ATGTTGGACGAGAGTAGTTTTGATGTGCATTTGAAACTATGGGCTCTCAGAGTTCCTCGTGAGCTCTGCAAGGCAGCTACTCGCATCCTCAATGGATACT TGCTTGACAAGCCTCGAGTGAAGCCCATTACTGAAGACCCAACAAGTGATAAGAATCGATACATGATACTGTCCGAAAAAATTGAGGATCCTGAGCTATC GGAGATCCCAGTTGAGAAACGTGATGAACTGAAAAGGGTATGTGAGATTGAAGTAGTTCCTTATTCCTTGACTCTTGGATATTCTTACTGGAGTGCAGGT CACATTGCTCATTTAAATATACACGATGAACTACTTCCGTATAAGGATGTTATTGCCAAAGTTATTTACGATAAAAACCAACCGAGGATCAAAACTGTTG TCAATAAAGTTGGAAGTATATCAAATGAGTTTCGAGTGCCAAAGTTTGAAATCTTGGCTGGTGACAAAGATTTGGCCACTGAAGTTAAGCAATACGGAGC TACATTTAAGCTTGATTACAGCTTGGTTTATTGGAACTCAAGATTGGAGCATGAACACATAAGGCTGGTCTCTCAGTTTAGACCTGGAGATATCATATGT GACATGTTTGCCGGCATTGGCCCTTTTGCTATTCCTGCAGCACAGAAAGGATGTATTGTTTTTGCTAATGATCTCAATCCAGACAGCATTCATTATTTGA AGATAAATGCAAAATTTAATAAGGTGGAGGATTTTATTGTCGCCTATAACATGGATGCTAGGAAATTCATCTCGCAAGTCATGACTGTGCCAATTCCTGA AAACAATTCAGTAGAGTTGGATGATGGATGTGCAAATGAAAATGTTGAGGCCGTTGAAGGAACAAAAGAAGGCCAGGAATCGGCTGCAGTGGTTAGTAAG GGTTTGCCTGTTAGTATTCCAAGAGATCAAGAAGATGCACCGGAAAAGTTAAATGCATCTATATCTTCTGCTAAAAGGTCTTCAGATTCTTGCAACGAAG AAAATGGGAAAAACCCTGGAGTGACTGGGAAGGCGAGGGCTAACAAGAGGATGAAGCAGTCCAATTTTCCCAAACCCAATACTTGGGAGCATGTTGATCA TGTGATAATGAACCTTCCTGCTTCTGCTGTTGAGTTTCTCGATGCATTCAGGAGGCTGATCCCGAGGCAATCCTGGAAGGGTGATCTTCCCATGATTCAC TGCTATTGCTTCATTCGCGCAAGTGAAACAAACGAAACAATTGTTAAGAAGGCAGAATCTGCGTTAGGTGCCCAGATACAAGATCCTACTCTGCACAGAG TGCGGGATGTTGCTCCGAACAAGGCTATGTTTTGCTTAACCTTCCGGCTTCCAGAAGCATGCTTCAGAGACAATACCACTTGCATATCTGCAGCAGACTT GTAA
AA sequence Show only first row Show all	>Lus10017739 pacid=23176320 polypeptide=Lus10017739 locus=Lus10017739.g ID=Lus10017739.BGIv1.0 annot-version=v1.0 MLDESSFDVHLKLWALRVPRELCKAATRILNGYLLDKPRVKPITEDPTSDKNRYMILSEKIEDPELSEIPVEKRDELKRVCEIEVVPYSLTLGYSYWSAG HIAHLNIHDELLPYKDVIAKVIYDKNQPRIKTVVNKVGSISNEFRVPKFEILAGDKDLATEVKQYGATFKLDYSLVYWNSRLEHEHIRLVSQFRPGDIIC DMFAGIGPFAIPAAQKGCIVFANDLNPDSIHYLKINAKFNKVEDFIVAYNMDARKFISQVMTVPIPENNSVELDDGCANENVEAVEGTKEGQESAAVVSK GLPVSIPRDQEDAPEKLNASISSAKRSSDSCNEENGKNPGVTGKARANKRMKQSNFPKPNTWEHVDHVIMNLPASAVEFLDAFRRLIPRQSWKGDLPMIH CYCFIRASETNETIVKKAESALGAQIQDPTLHRVRDVAPNKAMFCLTFRLPEACFRDNTTCISAADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	0	1
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	2.6	0.8713
AT1G08220			unknown protein		Lus10005355 [exp]	3.5	0.8774
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	4.2	0.8674
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	5.1	0.8862
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	5.3	0.8435
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	6.3	0.8675
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	6.3	0.8741
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	7.3	0.8734
AT4G15640			unknown protein		Lus10033970 [exp]	7.3	0.8888
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	8.2	0.8403

Compare expression of checked genes

Lus10017739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.