Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24330 522 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 441 / 4e-151 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 437 / 1e-149 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G18220 429 / 2e-146 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 417 / 9e-142 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 398 / 2e-134 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 398 / 2e-134 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 392 / 3e-132 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 377 / 4e-126 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 347 / 2e-114 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031098 [exp] 431 / 5e-147 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 424 / 1e-144 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10043075 [exp] 421 / 4e-143 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 420 / 1e-142 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10020261 [exp] 419 / 1e-142 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10033082 [exp] 403 / 5e-138 AT3G24330 248 / 3e-78 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 399 / 4e-135 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 399 / 4e-135 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 394 / 3e-132 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072300 [exp] 550 / 0 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 440 / 6e-151 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 431 / 1e-147 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 413 / 2e-140 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 401 / 2e-135 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 400 / 2e-135 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 399 / 1e-134 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 390 / 4e-131 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 390 / 6e-131 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 383 / 2e-128 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10017740 pacid=23176329 polypeptide=Lus10017740 locus=Lus10017740.g ID=Lus10017740.BGIv1.0 annot-version=v1.0 ATGGAAGGATCCACCCCACTACTTCTTTACTTCTTCTTCTTCCTGTTTCTTCTTGACGGAACCTCGGCGGCGGCAGCAGGAGGAGGAAGAGTCCGAGGCA GAGGGAGTAACGTCGGTGTGAACTGGGGGACTATGTCCACTCACCAGCTTCCTCCTGACAGAGTCGTCCAAATGCTCACGGATAACAACTTCGCCAAGCT CAAGCTCTTCGAGTTCGACGACGTAATCATGACTGCTCTTCTCGACACTCACATCGAGGTTATGCTGGCTATCCCCAATTACATGCTCCGTACCATGGCT GAGGATTTCGATTCCGCCTCTGCCTGGGTTGATCAGAATGTCACCGATTGGTGCTTCCATGGCGGCGTCAATGTCAAGTTGAGTCTCACCTTCTTCCTAC AGCTTCTTTGGTACGTTGCTGTGGGGAATGAGCCATTTCTACAGACGTACAATGGAAGTTTTGACAAGTACACTCTGCCAGCACTAAAGAACATCCAGAA TGCACTCAACAAAGCAGGAATTGGGGAGAAGGTGAAAGCCACTGTTCCATTCAATGCTGATGTCTACAATTCCCCTGCGATGTCTACAATTCCCCTGACA CTAACCCAGTCCCTTCAGCAGGGGATTTCAGGCCTGAAGTCAAGGACCTCACACTCGAAATCGTCCAATTCCTTGATGAAAATGATGCCCCATTCACTCC TATACGGGAACATGTACTTCCCTATGGACTATGCCTTCTTCGACGGCACTAACAAGCCAATCAAGGATGGTGACCTGCTCTACACAAATGTGTTCGATGC TAACTTTGACACATTGGTTTGGTCTCTAGTCAAATCTGGGTACCCTGACATGAGAATCATGGTTGGAGAAGTAGGCTGGCCAACCGACGGAGATCTCCAC GCTACCATTGAGAACGCCAAGCGATTCAACCAAGGGCTGCTGAAACATGTTGTGGATGGCAACGGGACACCAGCAAGGCAAGCTGGTAGCGATGATGATA AGATTGAAGTGTACCTATTCAGCCTGATTGATGAGAATGCCAAGAGTGTGGCTCCTGGTAAGTTTGAGAGGCACTGGGGGATATTCGAGTACGATGGGAG GCCCAAGTATGAGCTTGACTTAAAAGGGTATGGATCAGATGTAGGGCTGGTTGCAGTTGATGGAGTTTTGTACATGGAGAGGAAATGGTGTGTTCTGGAC CCAAATGCTGTTACTGACCTAACTGAGCTGTCCAAGAGTATGGATTACGCTTGTGGATTGGCTGATTGTACTGCTCTTGAATATGGATGTTCCTGCAACC ATCTGAGTGTTACTGGGAATGCTTCTTATGCGTTCAATATGTACTACCAGGTACAGGGTCAGAAAGATTGGAGCTGTGATTTCTCTGGCTTGGGTGTGGT TACTGATGAGAATCCTTCTGATGAGAAATGCTTGTTCCCTGTCATGATTGCTAATGGTGCTAGTTCAGTTCAGGGAGGCATCAAGTTTCTGTTGCGGAGA ATTTGGTTGGTTATTGTGTTGATGATCATGATGTTTCCATACATGTGA
AA sequence Show only first row Show all	>Lus10017740 pacid=23176329 polypeptide=Lus10017740 locus=Lus10017740.g ID=Lus10017740.BGIv1.0 annot-version=v1.0 MEGSTPLLLYFFFFLFLLDGTSAAAAGGGRVRGRGSNVGVNWGTMSTHQLPPDRVVQMLTDNNFAKLKLFEFDDVIMTALLDTHIEVMLAIPNYMLRTMA EDFDSASAWVDQNVTDWCFHGGVNVKLSLTFFLQLLWYVAVGNEPFLQTYNGSFDKYTLPALKNIQNALNKAGIGEKVKATVPFNADVYNSPAMSTIPLT LTQSLQQGISGLKSRTSHSKSSNSLMKMMPHSLLYGNMYFPMDYAFFDGTNKPIKDGDLLYTNVFDANFDTLVWSLVKSGYPDMRIMVGEVGWPTDGDLH ATIENAKRFNQGLLKHVVDGNGTPARQAGSDDDKIEVYLFSLIDENAKSVAPGKFERHWGIFEYDGRPKYELDLKGYGSDVGLVAVDGVLYMERKWCVLD PNAVTDLTELSKSMDYACGLADCTALEYGCSCNHLSVTGNASYAFNMYYQVQGQKDWSCDFSGLGVVTDENPSDEKCLFPVMIANGASSVQGGIKFLLRR IWLVIVLMIMMFPYM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	1.0	0.9628
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	1.4	0.9442
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	2.0	0.9045
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	3.5	0.9381
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	3.9	0.8972
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	4.9	0.8455
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	6.3	0.8606
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	6.7	0.8608
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	8.1	0.8913
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	8.7	0.7960

Compare expression of checked genes

Lus10017740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.