Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24350 273 / 3e-90 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) AT5G05760 184 / 9e-56 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033080 [exp] 399 / 2e-139 AT3G24350 432 / 1e-152 syntaxin of plants 32 (.1.2) Lus10028277 [exp] 232 / 3e-74 AT5G05760 417 / 7e-147 T-SNARE SED 5, syntaxin of plants 31 (.1) Lus10040213 [exp] 225 / 1e-71 AT5G05760 418 / 4e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157000 [exp] 349 / 2e-120 AT3G24350 294 / 3e-98 syntaxin of plants 32 (.1.2) Potri.018G072400 [exp] 343 / 5e-118 AT3G24350 332 / 3e-113 syntaxin of plants 32 (.1.2) Potri.010G191100 [exp] 210 / 1e-65 AT5G05760 395 / 8e-138 T-SNARE SED 5, syntaxin of plants 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10017741 pacid=23176339 polypeptide=Lus10017741 locus=Lus10017741.g ID=Lus10017741.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCATTAGGTAAAACGTCCTATCGTGATCGGACGCAGGAGTTCTTGGTCATCGCAGACAGGCTGAAGAAGTCAATCTCGTCGGTGAACAATG CGGGTGTTAGTAGCAGCAGCAGCAGCAGCATCGCGAGACCTGACGCCGCTCGATCTGCGGTTTCCATTCAGTCTGAATTTAGCAAACGAGCTTCAAAGAT TGGGTTTGGAATTCATCAGACGTCTCAGAAGCTATCCAAGCTTGCCAAATTGGCCAAGAGAACATCAGTATTTGATGACCCAACGATGGAGATCCAGGAA CTGACTGCTCTTATAAAGCAAGATATCACTGCGCTCAACTCAGCTGTTGTAGATCTCCAGCTCGTATGCAACTCTCAGAATGAGAGTGGAAACATCTCTA CTGACACCACAACCCATTCGACCACAGTTGTAGATAACCTAAAAAATCGTTTGATGAGTGCAACAAAGGAGTTTAAAGAAGTCTTAACAATGCGAACAGA GAATTTGAAGGTTCACGAGAACCGGAGGCAGTTGTTTTCTGCAAATTCTTCGAAAGATGCTGTCAATCCTTTTGTCCGTCAACGTCCACTAGCTTCTAGA TCTACAGCCAATGCTGCATCATCAGCTCCTCCACCTCCTTGGGCTAATGGTTCTGCAACCTCATCCCAGTTATTTCCTAGTTACATGCAGAGTCGAGCTG AGGCTCTACATAATGTGGAATCAACCATTCATGAACTAGGCAGTATCTTTACACAGCTAGCAACGATGGTGTCTCAGCAAGGAGAGCTTGCTATAAGGAT TGACGAGAACATGGACGATACACTGTCGAATGTAGAAGGTGCACAGGGGCAGCTGGTTAGGTATCTAAACAGCATATCGTCAAACAGGTGGCTGATGATA AAGATATTCTTTGTACTAGTTGTTTTCCTCATGATTTTCTTGTTCTTCGTTGCATAA
AA sequence Show only first row Show all	>Lus10017741 pacid=23176339 polypeptide=Lus10017741 locus=Lus10017741.g ID=Lus10017741.BGIv1.0 annot-version=v1.0 MSAALGKTSYRDRTQEFLVIADRLKKSISSVNNAGVSSSSSSSIARPDAARSAVSIQSEFSKRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQE LTALIKQDITALNSAVVDLQLVCNSQNESGNISTDTTTHSTTVVDNLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSANSSKDAVNPFVRQRPLASR STANAASSAPPPPWANGSATSSQLFPSYMQSRAEALHNVESTIHELGSIFTQLATMVSQQGELAIRIDENMDDTLSNVEGAQGQLVRYLNSISSNRWLMI KIFFVLVVFLMIFLFFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10017741 [exp]	0	1
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	5.2	0.8930
AT5G27490			Integral membrane Yip1 family ...		Lus10029935 [exp]	5.8	0.8907
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	5.9	0.8782
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	8.1	0.8761
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	10.4	0.8801
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	11.1	0.8843
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	17.3	0.8660
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	17.5	0.8751
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	17.9	0.8373
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	25.0	0.8444

Compare expression of checked genes

Lus10017741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.