Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 348 / 2e-114 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G01280 318 / 9e-103 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT4G31940 313 / 9e-101 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 301 / 7e-96 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G26300 296 / 2e-94 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G57260 295 / 7e-94 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT4G12300 294 / 2e-93 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT3G26330 293 / 2e-93 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT2G45560 294 / 3e-93 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT5G04330 292 / 1e-92 Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008112 [exp] 556 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 550 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 346 / 3e-113 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021158 [exp] 339 / 1e-110 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 333 / 3e-108 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 322 / 4e-104 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021620 [exp] 321 / 1e-103 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10043308 [exp] 318 / 7e-103 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10031674 [exp] 317 / 4e-102 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051300 [exp] 605 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 602 / 0 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 555 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 551 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 532 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 514 / 2e-179 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 511 / 4e-178 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 490 / 7e-170 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 358 / 3e-118 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 348 / 3e-114 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017742 pacid=23176352 polypeptide=Lus10017742 locus=Lus10017742.g ID=Lus10017742.BGIv1.0 annot-version=v1.0 ATGGAATCAGCTGTGTCATTAGACAATATGATTGCCCTGGCCTTATTACTTTTCAGCATTCTTCCCCTTCTAGTATTCATCCTAAAGAATCACTTAAACG TACGCCGCCGCCTGCTTCCTCCAGGTCCAAGACCATGGCCGATCATCGGCAACCTCAACCTCATCGGACCTCTCCCTCACCAGTCCCTCCACAAACTATC CCAAAAATATGGCCCTGTTTTGCACCTCAAGTTCGGCTCCATCCCTGTGGTGGTGGTGTCCTCTCCGGACATGGCCAAACAAGTCCTCAAGACCAACGAC CACCTCCTTGCAGGTCGTCCCGAAACGGCGGCCGGAAAACACACTACTTACAACTACCGCAACATCACGTGGGCGCCTTACGGACCTTACTGGCGGCAGG GGCGCAAGATATACCTGACCGAGCTCTTCAGCTCCAAGAGGCTGGCCTCCTACGAGTACATCCGTGTCGAGGAGAGACACGCATTTACATCGCGTCTTTT CTCGACAAAAGGACGCGAAGTGGTCCTCAAGGATCACCTTTCGAGGCTGACGCTGAGTGTTATTAGTAGAATAGTGTTGGGAAAGAAGTACTTTCGTGAC GGCGATAATGACGACGACAAGGAAGCCGCCATAGTGACCCTGGAGGAGTTTCAAGAGATACTGGATGAGTTGTTTTTGCTGAATGGTGTGCTGAACATTG GAGATTGGATACCGTGGCTTGATTTTTTTGACTTGCAGGGTTACGTCAAGAGGATGAAGGGTTTGAAAGTCAAGCTTGATAGGTTTCACGACTTTGTCCT GGACGAGCATCGGAGTAAGAGACATGATCATGTTGGGTCGTGGAATAAGGACGAGGAAGACATGGTGGATCTTCTCTTGCGACTTGCTGATGATCCTAAT CTTGATGTCAAACTTGACGATGATAGTGTTAAAGGCTTCTTACAGGACCTCATAGCGGGAGGAACGGACACGTCAGCGACGACAGTGGAGTGGGCTATGT CAGAGTTGATGAAGCAACCAAAGCTGATCGAAAAGGCAACAGCTGAGCTGGACGCAGTAGTCGGACGAGAGAGATGGGTTGAAGAAAGTGATATCCCCAA TCTGCCCTTCATCGATGCCATAATGAAGGAGACAATGCGGAAGCACCCAGTTGCTGTACTGCTAGCCCCTCATTTGGCACTCGACGACTGTACTCTAGGC GGATACGACGTCGCCAAGGACACCCGAGTTTTCATTAACACGTGGAGCATGGGGAGGGACCCTTCCATTTGGGCCGAACCCGAACAGTTCAGCCCGGAAA GGTTTCTTAAGAGTAAGGATAGGATTGAGGTGAAAGGGCAGAGTTTCGAGTTGTTGCCGTTCGGATCGGGGAGGAGGATGTGTCCAGGGTATAGCCTTGG ACTCAAAATGATTGCATCAAGCTTAGCTAATTTGCTCCATGGGTTCAATTGGAAGTTGGGTGAAGGTGTTACTCCGGACAGTTTGAGCATGGACGAGGTT TATGGGCTGGCTACTCCTCGAAAGTTCCCACTTGTTGTTATCCTTGGCCCTAGGCTTTCGCATTCACTCTACCATCAGTGA
AA sequence Show only first row Show all	>Lus10017742 pacid=23176352 polypeptide=Lus10017742 locus=Lus10017742.g ID=Lus10017742.BGIv1.0 annot-version=v1.0 MESAVSLDNMIALALLLFSILPLLVFILKNHLNVRRRLLPPGPRPWPIIGNLNLIGPLPHQSLHKLSQKYGPVLHLKFGSIPVVVVSSPDMAKQVLKTND HLLAGRPETAAGKHTTYNYRNITWAPYGPYWRQGRKIYLTELFSSKRLASYEYIRVEERHAFTSRLFSTKGREVVLKDHLSRLTLSVISRIVLGKKYFRD GDNDDDKEAAIVTLEEFQEILDELFLLNGVLNIGDWIPWLDFFDLQGYVKRMKGLKVKLDRFHDFVLDEHRSKRHDHVGSWNKDEEDMVDLLLRLADDPN LDVKLDDDSVKGFLQDLIAGGTDTSATTVEWAMSELMKQPKLIEKATAELDAVVGRERWVEESDIPNLPFIDAIMKETMRKHPVAVLLAPHLALDDCTLG GYDVAKDTRVFINTWSMGRDPSIWAEPEQFSPERFLKSKDRIEVKGQSFELLPFGSGRRMCPGYSLGLKMIASSLANLLHGFNWKLGEGVTPDSLSMDEV YGLATPRKFPLVVILGPRLSHSLYHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	0	1
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	6.9	0.8517
AT4G35210			Arabidopsis protein of unknown...		Lus10023951 [exp]	11.6	0.7623
AT1G75280			NmrA-like negative transcripti...		Lus10042968 [exp]	16.6	0.7449
AT5G27660			Trypsin family protein with PD...		Lus10037815 [exp]	22.2	0.7633
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10034167 [exp]	23.2	0.7923
					Lus10023751 [exp]	26.0	0.7460
AT2G43770			Transducin/WD40 repeat-like su...		Lus10003390 [exp]	28.8	0.7199
AT2G28690			Protein of unknown function (D...		Lus10005884 [exp]	37.7	0.7930
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	40.8	0.7910
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10009928 [exp]	41.7	0.7053

Compare expression of checked genes

Lus10017742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.