Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03390 641 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G41040 249 / 2e-77 HXXXD-type acyl-transferase family protein (.1.2) AT1G27620 241 / 2e-74 HXXXD-type acyl-transferase family protein (.1) AT3G48720 219 / 2e-66 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 219 / 3e-66 HXXXD-type acyl-transferase family protein (.1) AT5G48930 184 / 8e-53 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G17540 181 / 2e-51 HXXXD-type acyl-transferase family protein (.1) AT3G03480 179 / 7e-51 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT1G28680 175 / 2e-49 HXXXD-type acyl-transferase family protein (.1) AT2G40230 174 / 2e-49 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033079 [exp] 965 / 0 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 255 / 8e-80 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 245 / 7e-76 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 242 / 8e-75 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 227 / 5e-69 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10024278 [exp] 207 / 4e-61 AT1G27620 550 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 206 / 1e-60 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10025523 [exp] 197 / 1e-57 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 192 / 1e-55 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157100 [exp] 724 / 0 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 723 / 0 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 266 / 6e-84 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 264 / 2e-83 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 259 / 9e-82 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.002G032200 [exp] 235 / 5e-72 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 229 / 1e-69 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 221 / 8e-67 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G003000 [exp] 211 / 4e-63 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 207 / 1e-61 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10017744 pacid=23176302 polypeptide=Lus10017744 locus=Lus10017744.g ID=Lus10017744.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCATCTTCTTCTTTAGTTCAGGAGCTCCATTTCCCACCTCTAAACATCCCCATAACCACTGCTCAACCAATCCACGTCTCCCCAT CAGGACCCATCCCTCCCGATCTCGGCCAATGTCTCTACCTCTCTAACCTCGACGACATCATCGGAGCTCGAGTCTTCACCCCTACTGTCTACTTCTACAC CTCTGATTTCTTCCATTCCAACCGTAATAAACCCGTCGTCAGAACGCTCAGAGACGCTCTTGCTGCAGTCCTTGTCCCTTACTTCCCTTTATCAGGAAGG CTCAGGGAATCTACAAATGGCAAATTGGAGGTCTTCTTTGGACCCGAACAAGGAGCTCTAATGGTCGAGGCTTACTCAGACATGTCATTGGCTGACCTCG GTGACCTCACCGTCCCCAACCCTGCTTGGGCTCCTTTGATCTACATGTTCCCTGACGAAGAGCCTTACAAAGTTCTTGACATGCCTCTCCTCATTGCTCA GATTACCATCTTCAGCTGTGGTGGCTTCAGCCTTGGCTTGAGGCTCTGCCATTGCATCTGTGATGGTCTTGGAGCTATGCAGTTTCTCGGTTCATGGGCC GCCACTGCTAAATCGGGTATTCTGGTCACCAATCCAGATCCGGTTTGGGATCGGGAAGTACTCCGGCCGCGTGATCCGCCCAAGGTGAAATATCCTCACC TCGAATTCATGAAAATCGATGATGGATCTAGCTTGACGTTGAGTCTCTGGAAAGAAAAGCCTGTCCAGAGGTGTTACAGAGTTAGCAGAGAGTTCCAAGC TCGACTCAAAGGCTTAGCTCAATCCAGCGAAAGATTAATTACCTGCACCACTTTCGACGCCATGGCTGCACACATCTGGAGATCCTGGGTTAAAGCCTTG GATGTGAAACCTTTAGATTATAGGCTCCGCCTAACGTTCTCGGTCAATGCTCGACAGAAATTGAAGAACCCGCCGTTGAGAGACGGGTTTTACGGCAATG TTGTGTGTTTAGCCTGCGCGACGAGCTCCGTCAACGAGCTCGTAAACGGACGTTTGGCAGATACGGCGCGGCTGGTTCGCGAAGCGAGAATCGACGTCTC CGAGGAGTATCTGAGATCAACGATCGACTATGTAGAAGTAGACAGGCCGAGAAGGCTGGAATTCGGAGGGAAATTGACGATCACGCAGTGGACTAGGTTT CCGATTTACGAGACGGCAGATTTCGGGTGGGGACGGCCGGTGTACGCCGGGCCGATTGACCTGACGCCGACGCCGCAGGTGTGCGTGTTGTTGCCGGAAG GGGAGGCGGAGCCGAGCGGTAGGACGGTGATCTGTATCTGCTTACCAGAGTTCGCCACCGGGAAGTTCACGGAGTTGCTGTGCTCGGGTGTTGTTGTTGA TCGGTACGGAGATGAAGAGAAAGTGTTTGATAAAAATGTCTGA
AA sequence Show only first row Show all	>Lus10017744 pacid=23176302 polypeptide=Lus10017744 locus=Lus10017744.g ID=Lus10017744.BGIv1.0 annot-version=v1.0 MASSSSSSSLVQELHFPPLNIPITTAQPIHVSPSGPIPPDLGQCLYLSNLDDIIGARVFTPTVYFYTSDFFHSNRNKPVVRTLRDALAAVLVPYFPLSGR LRESTNGKLEVFFGPEQGALMVEAYSDMSLADLGDLTVPNPAWAPLIYMFPDEEPYKVLDMPLLIAQITIFSCGGFSLGLRLCHCICDGLGAMQFLGSWA ATAKSGILVTNPDPVWDREVLRPRDPPKVKYPHLEFMKIDDGSSLTLSLWKEKPVQRCYRVSREFQARLKGLAQSSERLITCTTFDAMAAHIWRSWVKAL DVKPLDYRLRLTFSVNARQKLKNPPLRDGFYGNVVCLACATSSVNELVNGRLADTARLVREARIDVSEEYLRSTIDYVEVDRPRRLEFGGKLTITQWTRF PIYETADFGWGRPVYAGPIDLTPTPQVCVLLPEGEAEPSGRTVICICLPEFATGKFTELLCSGVVVDRYGDEEKVFDKNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	0	1
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	2.0	0.8760
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	4.2	0.8272
AT5G61340			unknown protein		Lus10003483 [exp]	6.0	0.8165
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10013099 [exp]	8.3	0.7188
AT5G48385			FRIGIDA-like protein (.1)		Lus10038038 [exp]	9.2	0.7367
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	9.7	0.7847
AT1G49330			hydroxyproline-rich glycoprote...		Lus10015036 [exp]	10.4	0.7748
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	10.8	0.8026
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	16.0	0.7641
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	22.0	0.7070

Compare expression of checked genes

Lus10017744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.