Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26890 2021 / 0 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1) AT5G25530 50 / 1e-05 DNAJ heat shock family protein (.1) AT3G62600 48 / 3e-05 ATERDJ3B DNAJ heat shock family protein (.1) AT1G10350 48 / 3e-05 DNAJ heat shock family protein (.1) AT5G48030 48 / 4e-05 GFA2 gametophytic factor 2 (.1) AT5G01390 47 / 4e-05 DNAJ heat shock family protein (.1.2.3.4) AT5G59610 46 / 8e-05 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G08910 47 / 9e-05 DNAJ heat shock family protein (.1) AT4G28480 46 / 0.0002 DNAJ heat shock family protein (.1.2) AT2G20560 45 / 0.0004 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033077 [exp] 2375 / 0 AT2G26890 2123 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033078 [exp] 151 / 4e-42 AT2G26890 120 / 2e-32 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020949 [exp] 49 / 2e-05 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10017687 [exp] 49 / 2e-05 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 48 / 3e-05 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10013981 [exp] 48 / 4e-05 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10027803 [exp] 48 / 6e-05 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 48 / 6e-05 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 47 / 6e-05 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072600 [exp] 2157 / 0 AT2G26890 3625 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.011G057601 [exp] 51 / 4e-06 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 49 / 2e-05 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 49 / 2e-05 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 48 / 3e-05 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 48 / 4e-05 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 46 / 0.0001 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 46 / 0.0001 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.001G072700 [exp] 45 / 0.0003 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G122600 [exp] 45 / 0.0003 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10017747 pacid=23176316 polypeptide=Lus10017747 locus=Lus10017747.g ID=Lus10017747.BGIv1.0 annot-version=v1.0 ATGAAGTTTTCTTCCAAGTATAGAGCTAGTATATTGACTGAGCTGCATAGACTGAGGTGGAATAGGATTGGGGCGGTTGCGGAGTTCCCGGTGTTGCATT TGCGAAGACGGAATGGAGAATGGGTACCGTATTCGGCTTCGTTACAGAAATTGAAAGTCACTTACATTGGGGTTGAATTGATTGATTCGAGATCTGGAGA TCTTCGCTGGTGCTTGGACTTTAGAGACATGAAATCCCCAGCAATCATAGTCCTTTCAGATGCTTATGGGAAGAAAAGTGATCATGGTGGTTTTGTTCTT TGCCCTCTATACGGAAGAAAATCCAAAGCCTTCCAAGGTTCTTCGGGAACCACAAACTCTACAATTATCTCAAACCTGACTAAGACTGCCAAGGCAATGG TCGGAGTATCACTGGTGGTGGACAGCTCTCAGTCACTGACTGTAATGGAGTATTTAAAGCGAAGAGAGAAAGAAGCAGTTGGAGCTGCGGAAACTCCTTG TGGCGATTGGTCTGTAACCAGGTTGCGCTCTGCTGCTCATGGAACTCTTAATGTTCCTGGACTAACTTTGGGAGTCGGTCCTAAAGGTGGGCTTGGAGAG CATGGCGATGCCATCTCCCGTCAACTGATTCTGACTAGGGTTTCACTTGTTGAAAGGCGGCCGGAAAACTATGAAGCTGTTATTGTTCGTCCTTTATCGG CTGTGAATTCACTTGTCCGATTTGCGGAGGAGCCTCAAATGTTTGCCATCGAGTTCAACGATGGGTGTCCAATCCAAGTTTATGCAAGCACATCACGAGA TAATTTACTGGCAGCTGTGCGTGACATGTTGCAAATAGAAGGTCAGTGTCCTGTACCTATTTTGCCAAGGCTCACAATGCCCGGGCACCGTATTGACCCC CCTTGTGGGAGAGTCCATTTTCTACTAGGACCTCAACGACCTATCGCGGACTTGGAAGGTGCATCTATGCATTTGAAACATTTAGCATCAGCTGCTAAAG ATGCTGTTGCTGAAGGTGGTTCACTGCCCGGTTCAAGAGCTAAACTGTGGCGTAGAATAAGGGAGTTCAATGCCTGTATCCCGTATACTGGAGTTCCACC TAGCATTGAAGTACCCGAGGTAACATTAATGGCCCTGATTACAATGCTTCCAGCGGCTCCAAATCTCCCCCCAGAGTCTCCTCCTTTGCCAGCTCCTTCT CCTAAAGCAGCGGCAACAGTGATGGGTTTTGTTGCATGTTTACGTAGATTGTTGGCTTCAAAAGCTGCAGCTTCTCATGTGATGTCATTTCCAGCTGCTG TAGGAAGAATAATGGGTTTACTTAGGAATGGTTCTGAGGGTGTGGCCGCAGAAGCTGCAGGCCTTATTGCAGCTCTTATTGGGGGTGGTTCTGGGGATCC CGGGCTGTTGGCAGATTCTAAGGGTGAACAGCATGCTACAACAATGCACACAAAGTCCGTCTTGTTTGCTCACAGTGGTTATGTCACTGTAATTGTTAAC AGATTGAAACCTATGTCTGTGTCACCTTTATTATCAATGGCCATTGTGGAAGTTCTTGAGGTTATGATATGTGAGCCGCATGGTGAAACTACACAATATA CGGTTTTTGTTGAATTGTTACGTCTGGTAGCTGGTTTGCGACGTCGTTTATTTGCACTTTTTGGACATCCTGCTGAAAGTGTAAGGGAAACAGTTGCTGT CATTATGCGTACGATTGCAGAAGAGGATGCAATCGCGGCAGAGTTCATGCGGGATGCTGCTCTGCGTGATGGTGCTTTGTTGAGGCATTTGTTACATGCA TTTTATCTCCCTGCTGGTGAAAGGCGGGAAGTTAGTCGACAGCTTGTAGCTCTATGGGCAGATTCATATCAACCTGCTTTGGATCTATTGTCTAGAACCC TGCCTCCAGGGCTCGTTGCTTATTTACACACACGGACTGAGGGTTCTTCAAATGGGGATTCAAATCAAGAGGAATCATTGATTAGTAGACGTCAAAAACG TTTGCTTCAACAAAGAAAACTCCGTAATGTGGGAGGTATTACATCTCAGGAGAATCCCTCAACTTCTGTTAATAACTACGAGGTCGGTGATCTTGGCAGA GAATCAATGTCTACTGCCTTTAGAGTGCCAGATAACCATCCAACATCTGTTCTAGATTCAAATTATGGCCAATCACCTACTGCTGTTGTTGATAGTTTAG CCAGCAAGGTTCCACAAATGAGGGTCTCACAAACTGATAATCCCTATGGCATTGCTACAGTTTATATGCCATCAACCAATACAAGCGAGGCATCTGAAAC AAATGTTTCAAATTCTGCAAACTATGATGCACAGGTTGCAGGATTACAAAGTGGTGTTCCAGCTCCTGCCCAGGTTGTTGTGGAGAATACACCAGTGGGT TCCGGTCGGCTACTTTGCAATTGGCATGAATTTTGGAAGGCTTTTAGTCTTGACCATAATCGTGCCGACTTAATTTGGAATGAACGCACTAGACAAGAAC TTAGGGAGACATTGAAGGATGAAGTTCATAAACTAGACATGGAGAAGGAGCGCACAGAAGATATTGTTCCTGGAGGTGCAACTGGAGAGTCTGATGCTGG ACAAGATGGTGTGCCACAGATATCATGGAATTATCCTGAGTTTTGTGTTCGTTATCCTAGCTTGTCAAAAGAAGTTTGTGTTGGTCAATATTATTTGCGG CTACTGCTTGACAGTAGTAGCAATGGGAGAGCACATGATTTTCCATTGCGCGATCCTGTAGCTTTCTTTAGGGCACTCTACCATCGATTTCTATGTGATG CTGATACAGGGCTTACGGTGGATGGTGCCGTTCCTGATGAACTAGGTGCATCTGATGATTGGTGCGATATGGGTAGATTAGATGGTTTTGGGGGAGGTGG AGCTTCATCAGTCAGAGAGCTTTGTGCTAGGGCAATGGCTATCGTCTATGAACAACACTACACTGTGATTGGGCCTTTTGAGGGCACTTCACATACAACA GTTCTTTTAGACCGGACAGATGATAGGTCACTAAGGCATCGGCTTCTCCTTTTATTGAAGGTTCTGATGAAGAATTTATCCAATGTGGAGGCTTGTGTTT TGGTTGGAGGATGTGTATTAGCTGTTGACCTTCTTACTGTTGCTCATGAAGCTTCAGAAAGGACTGCAATCCCTTTGCAATCTAACTTGTTAGCTGCTAC GGCTTTCATGGAACCACTTAAAGAGTGGATGTACTTGGATAAAGATGGTGCTGAAGTCGGTCCCGTAGAAAAGGATGCTATCAGACGACTTTGGTCGAAA AAGGCTATTGACTGGACAACAAAATGCTGGGCTTCTGGGATGGCTGAGTGGAAGAGACTGCGGGATATTCGTGAACTTCGATGGACCATGGCTATTCGTG TTCCTGTCCTCACACCATCTCAGGTAGGGGATACAGCACTGACTATATTACACAACATGGTGTCCGCACATTCAGATTTAGATGATGCTGGAGAGATTGT TACCCCAACCCCCAGGGTAAAGCGGATTTTGTCTAGTCCTCGTTGCCTTCCTCATATCACACAGGTCATGCTGTCTGGAGAACCCAGCATAGTGGAGGCT GCTGCAGCATTGCTGAAGGCTGTTGTAACAAGAAATCCAAAGGCCATGATACGTCTTTATAGTACTGGTGCATTTTACTTTGCCCTAGCCTATCCTGGAT CGAATCTCCTTTCAATTGCACATTTGTTTGCTGTGACTCATGTCCATCAAGCTTTCCATGGTGGTGAAGAGGCTGCAGTTTCTTCTTCACTACCTCTTGC AAAACGCAGTGTATTAGGTGGGCTTCTTCCAGAGTCTCTGCTCTATGTGCTGGAGCGGAGTGGACCTGCTGCATTTGCTGCAGCCATGGTTTCTGATTCT GATTCTCCAGAGATTATCTGGACACACAAAATGCGAGCAGAAAACTTAATTCGTCAGGTCTTGCAGCATCTTGGTGATTTCCCTCAGAAGCTATCTCAGC ACTGTCATTCTTTATATGATTATGCTCCCATGCCTCCTGTAACCTATCCAGAGTTAAAAGATGAAATGTGGTGTCACCGTTACTACCTAAGGAATCTGTG TGATGAAATTCGCTTTCCAACGTGGCCAATTGTTGAACATGTTGAGTTCTTACAGTCCTTATTAGTTATGTGGCGTGAAGAGTTGACAAGGAGACCTATG GACCTTTCGGAAGAGGAAGCTTGCCGAATATTAGAGATATCCCTGGAAGATGTATCAAATGATCACGGGAGAAGGAGCTCTTTTGAGACTTCTGTGGAGA TTAATAGTATATCGAAACAGATTGAGAACATAGATGAAGAAAAACTCAAGCGCCAATATAGGAAACTTGCAATGAAGTATCACCCTGACAAAAATCCAGA GGGCAGGGAGAAGTTTCTCGCTGTGCAGAAAGCTTATGAACGCCTTCAGTGTTCTACCTAA
AA sequence Show only first row Show all	>Lus10017747 pacid=23176316 polypeptide=Lus10017747 locus=Lus10017747.g ID=Lus10017747.BGIv1.0 annot-version=v1.0 MKFSSKYRASILTELHRLRWNRIGAVAEFPVLHLRRRNGEWVPYSASLQKLKVTYIGVELIDSRSGDLRWCLDFRDMKSPAIIVLSDAYGKKSDHGGFVL CPLYGRKSKAFQGSSGTTNSTIISNLTKTAKAMVGVSLVVDSSQSLTVMEYLKRREKEAVGAAETPCGDWSVTRLRSAAHGTLNVPGLTLGVGPKGGLGE HGDAISRQLILTRVSLVERRPENYEAVIVRPLSAVNSLVRFAEEPQMFAIEFNDGCPIQVYASTSRDNLLAAVRDMLQIEGQCPVPILPRLTMPGHRIDP PCGRVHFLLGPQRPIADLEGASMHLKHLASAAKDAVAEGGSLPGSRAKLWRRIREFNACIPYTGVPPSIEVPEVTLMALITMLPAAPNLPPESPPLPAPS PKAAATVMGFVACLRRLLASKAAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAALIGGGSGDPGLLADSKGEQHATTMHTKSVLFAHSGYVTVIVN RLKPMSVSPLLSMAIVEVLEVMICEPHGETTQYTVFVELLRLVAGLRRRLFALFGHPAESVRETVAVIMRTIAEEDAIAAEFMRDAALRDGALLRHLLHA FYLPAGERREVSRQLVALWADSYQPALDLLSRTLPPGLVAYLHTRTEGSSNGDSNQEESLISRRQKRLLQQRKLRNVGGITSQENPSTSVNNYEVGDLGR ESMSTAFRVPDNHPTSVLDSNYGQSPTAVVDSLASKVPQMRVSQTDNPYGIATVYMPSTNTSEASETNVSNSANYDAQVAGLQSGVPAPAQVVVENTPVG SGRLLCNWHEFWKAFSLDHNRADLIWNERTRQELRETLKDEVHKLDMEKERTEDIVPGGATGESDAGQDGVPQISWNYPEFCVRYPSLSKEVCVGQYYLR LLLDSSSNGRAHDFPLRDPVAFFRALYHRFLCDADTGLTVDGAVPDELGASDDWCDMGRLDGFGGGGASSVRELCARAMAIVYEQHYTVIGPFEGTSHTT VLLDRTDDRSLRHRLLLLLKVLMKNLSNVEACVLVGGCVLAVDLLTVAHEASERTAIPLQSNLLAATAFMEPLKEWMYLDKDGAEVGPVEKDAIRRLWSK KAIDWTTKCWASGMAEWKRLRDIRELRWTMAIRVPVLTPSQVGDTALTILHNMVSAHSDLDDAGEIVTPTPRVKRILSSPRCLPHITQVMLSGEPSIVEA AAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLLSIAHLFAVTHVHQAFHGGEEAAVSSSLPLAKRSVLGGLLPESLLYVLERSGPAAFAAAMVSDS DSPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYDYAPMPPVTYPELKDEMWCHRYYLRNLCDEIRFPTWPIVEHVEFLQSLLVMWREELTRRPM DLSEEEACRILEISLEDVSNDHGRRSSFETSVEINSISKQIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQCST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	0	1
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	1.0	0.9777
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018619 [exp]	3.5	0.9586
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	3.7	0.9634
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	3.9	0.9436
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	4.5	0.9585
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	4.6	0.9555
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	4.6	0.9594
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	4.9	0.9550
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	6.2	0.9445
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	8.8	0.9556

Compare expression of checked genes

Lus10017747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.